Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Equus_20caballus_20[refseq_20GCF_5F000002305.2_202007-10-29] 9,637 sequences; 2,474,929,062 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq7 86.0 7e-12 seq15 82.4 9e-11 >seq7 Length=98542428 Score = 86.0 bits (94), Expect = 7e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 75896 TCACAGACGGAGACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGT 75955 || ||||| ||||| || || || || ||||| ||||| ||| | ||||| ||||||| Sbjct 72040288 TCCCAGACAGAGACAGGTACCCCGTACATGCTCTACAAAGATTCCTGTAATCGGAAGAGT 72040347 Query 75956 AACCAAAAGAATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTAC 76015 ||||| |||| ||||||| ||||| || ||||| ||||| ||||| |||| || Sbjct 72040348 AACCAGCAGAACCTGGGAACGATCAAATGCAGCAATCTATGCACAGAAATAGTAGAATAT 72040407 Query 76016 ACAGATAAGGATGAG 76030 || || |||||| Sbjct 72040408 ACCAGCAAAGATGAG 72040422 >seq15 Length=91571448 Score = 82.4 bits (90), Expect = 9e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 65443 AATCCATTTGACTTTATGGAAAACATTAGCCTTGATGGGAAGACCAACTTCTTTGAGAAG 65502 |||||||||||||||||||| || ||| || || |||||||| ||||||||||||||| Sbjct 83356421 AATCCATTTGACTTTATGGAGAATATTTCACTGGAAGGGAAGACTAACTTCTTTGAGAAG 83356362 Query 65503 CGAGTTGGGGACTAT 65517 |||| || || ||| Sbjct 83356361 AGAGTAGGCGAGTAT 83356347 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596497735734560