Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Equus_20caballus_20[refseq_20GCF_5F000002305.2_202007-10-29] 9,637 sequences; 2,474,929,062 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq3 91.5 3e-13 >seq3 Length=119479920 Score = 91.5 bits (100), Expect = 3e-13 Identities = 161/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAG 192367 |||||| | ||| | || || | ||| | ||| | || ||| || | || || |||| Sbjct 109160458 ACCACCACAAAGTCTCAACACAAGATGAAGAGTGGATTCCTTTTGAT-TGTTGTAGTCAG 109160516 Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427 | || | || |||| | || ||| || ||||||||||| | ||| || |||||||| | Sbjct 109160517 ACAAAGCATGTCCATCTTTCATTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAG 109160576 Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487 | |||||||| |||| || || || |||| ||| ||| | ||| | | ||| | Sbjct 109160577 GAATTCCTTCCGTATCCTGGATCTTGGCCTTTATATTTTCTATTGTATCCTAGGGTTCAA 109160636 Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 | || ||||| ||||| || || || | ||||| | || |||||||| || Sbjct 109160637 CCTCGAGAGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATCTT 109160688 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984358442254950