Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Equus_20caballus_20[refseq_20GCF_5F000002305.2_202007-10-29] 9,637 sequences; 2,474,929,062 total letters Query= NC_024303.1 Length=144898 Score E Sequences producing significant alignments: (Bits) Value seq15 86.0 6e-12 >seq15 Length=91571448 Score = 86.0 bits (94), Expect = 6e-12 Identities = 126/176 (72%), Gaps = 2/176 (1%) Strand=Plus/Plus Query 21122 TCTAGCATTTGGGGGCCTAGCTGCGATGGCTTAGATTGCATTGTTAAGCGGTGTGAACTG 21181 || ||||| ||||| || | || || ||| | ||| |||||||| |||| ||| | || Sbjct 83089180 TCCAGCATATGGGGACCGACGTGTGACGGCCTCGATCGCATTGTTGAGCGCTGTAACTTG 83089239 Query 21182 CCAGAGCTTCAAGTGGGCGACTGGCTCATATTTGAAAACATGGGCGCTTACAGCTTGGTC 21241 || || | || |||||||| ||| | | |||||||||||||||||||| | || | Sbjct 83089240 CCCGAAATGCAGGTGGGCGATTGGATGCTCTTTGAAAACATGGGCGCTTATA-CTGTTGC 83089298 Query 21242 AGCT-CTTCAACCTTTAACGGCTTCCCAAAGCCAGAAAAGCACTATGTTATTTCAG 21296 ||| |||| || || || || |||| | |||| | ||||||| || |||| Sbjct 83089299 TGCTGCTTCGACTTTCAATGGATTCCAGAGGCCAACTATCTACTATGTCATGTCAG 83089354 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 463489760138160