Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Equus_20caballus_20[refseq_20GCF_5F000002305.2_202007-10-29] 9,637 sequences; 2,474,929,062 total letters Query= NC_024382.1 Length=137090 Score E Sequences producing significant alignments: (Bits) Value seq8 165 7e-36 >seq8 Length=94057673 Score = 165 bits (182), Expect = 7e-36 Identities = 477/718 (66%), Gaps = 67/718 (9%) Strand=Plus/Plus Query 1071 CCACAGCTCTAGCTTCTGGTCTGAAAAAGAGTAGGTTTCTCTTGAGAGTTAAGG-AAGGC 1129 ||||||| |||||||| |||||||||| || |||| |||| || ||| || | ||||| Sbjct 22464468 CCACAGCCCTAGCTTCAGGTCTGAAAA-GAATAGGCTTCTTCTG-GAGGCAATGTAAGGC 22464525 Query 1130 ATTTTAAAGAAAAGGCTTAGaaaaaaaaTCTGGTGGGCACTTACATATTCTTCCATAAGT 1189 ||||||||||| |||||||| | || ||| |||||||||| || || |||| |||| Sbjct 22464526 GTTTTAAAGAAACAGCTTAGAATAGAAGTCTCTAGGGCACTTACGTAGTCATCCAAAAGT 22464585 Query 1190 TTTGAAAATGAGAACTGTAGTTCTGTGATTACAGCTGATTGTATGTCCCGTGGTAG---- 1245 || | | || ||||| |||| ||||| || |||||| || |||| | Sbjct 22464586 TTCTTAGACAAGTTCTGTAATTCTACGATTA---TTGCTTGTATTTCTTTTGGTTGTAGC 22464642 Query 1246 ---TGGATGG---CCG--TGGGAGGAGAGCAAGGCTCCGGAACAGCAGAGCAGGAACAGG 1297 | ||||| ||| || ||| | | ||| | ||| |||||||||||||||||||| Sbjct 22464643 TGATAGATGGGTCCCGTATGAGAGAACATCAAAGTTCCCAAACAGCAGAGCAGGAACAGG 22464702 Query 1298 GCAAGCCCTGAAGATTTTGTAAAAATAGAGTAATGCCCACACACCCCCACCTGCCCCA-- 1355 |||| || | ||| || | ||| ||| |||| | ||| || || Sbjct 22464703 GCAAACCTAGTGGATCCTGGAGAAAGAGAACGATGCTGTGA----GGCACATGAGGCAGC 22464758 Query 1356 TACCTTAACCTGCCCAAGCTTTCACCACCGAAGC------TGTGC-CGGACTGAGC---- 1404 |||| || ||| ||||| | ||| |||| || || |||| || Sbjct 22464759 TACCCCCGCCCACCCGAGCTTCAATCACTTAAGCCATCGTTGAGCAACCACTGGGCCAAG 22464818 Query 1405 CCCATCC--AGTCTTTCTCTTTGTCTAGGGAAACTCGACCGCACCCACCAGCATCAATGG 1462 ||| ||| || ||| ||| ||| | || ||| | |||| || | || || Sbjct 22464819 CCCCTCCAGAGGCTTCCTCCCTGTGTGATGA-----GACAG--CCCA--AGAACCAGAGG 22464869 Query 1463 CTGTAGGACCTATCGATACCTGAGGGGGATACTATAGCAGGAGAGAGCGAGGCCGCCGCT 1522 | | ||||| | | ||||| |||| || || || ||||| | |||| | ||| Sbjct 22464870 CAGCAGGACGCAGTGGTACCTATATGGGAGACCATGGCGAGAGAGCACAAGGC--CTGCT 22464927 Query 1523 TTGGCAACAGCTGCTAGAGTGAGATGTGCTCGCTATACTTTTAGGGAACTGTATATAAAG 1582 | ||| ||||| || || ||||||| |||| || | || ||| ||||||||| Sbjct 22464928 TCAGCACCAGCTTCTTGAACCAGATGTGTTCGCCATGGTCTTCAGGA--GATATATAAAG 22464985 Query 1583 GGCTAGTTGTAAG---GAGGAGCACTAAAAGTACCGCCCACGGTAAA------GTCA--- 1630 ||| |||||| || || ||||| | || || ||||||| || ||| ||| Sbjct 22464986 GGCCAGTTGTGAGGAAGAAGAGCAATTAATGTCCCGCCCATGGCAAATTATTGCTCAGCT 22465045 Query 1631 -TTACTCAGAAAACA-TTTCAAATTTATGCCATCTGATCTTGGATAAAAGCAAGGCTCGA 1688 || |||||||||| ||||||| || ||||| | | ||| | |||||| |||| || Sbjct 22465046 TTTCTTCAGAAAACACTTTCAAAATTCTGCCACCCAAGGCTGGGTGAAAGCAGGGCTGGA 22465105 Query 1689 AGGAAA---TGAAGTTACCCTTAAGATGGGCAGATGCTTGACGCACTGCATATACACA 1743 |||||| ||| |||||||| ||| | ||||||||| |||| || | || | ||||| Sbjct 22465106 AGGAAATGCTGAGGTTACCCTCAAGGTAGGCAGATGCCTGACTCAGTACACACACACA 22465163 Score = 134 bits (148), Expect = 1e-26 Identities = 333/494 (67%), Gaps = 45/494 (9%) Strand=Plus/Plus Query 287 AACAACTTACAGCAGAATTCTCGTACACAGAGGGCA-CTAATCTTAAGGCTCTTTGCATT 345 || |||| |||||||| ||||| |||| ||| || || | || ||||| | | || Sbjct 22462774 AATAACTGACAGCAGAGTTCTC--ACACTGAGCTCATCTCTTTTTCAGGCTTCATACGTT 22462831 Query 346 CCTGCCATTCAA-AAGGAACAGGGTCAACCACATGGTCTTCAGTGACCTTCCAGGCTTCA 404 ||| ||||| |||||| || ||||||| |||| ||| | |||||| | ||| | Sbjct 22462832 TCTGTCATTCTGTAAGGAATCGGTTCAACCAGATGGCCTTAAATGACCTACTGAGCTCTA 22462891 Query 405 GTGCCCACTAATTTCAGGCACTTTGAAAACATTTCTAAAACACACTGTATGAACACtttt 464 || || |||||| ||||||||| | ||||| | ||||| ||| Sbjct 22462892 -TG--------TTCCAGGCAGTTTGAAAACCATCGTAAAATGGTCAAGATGAATCTTTTA 22462942 Query 465 ttttGATAGCTGTCTGTAGGCATAGAAA------TGTCTGGTGCGCGTTGCAATTCAAGT 518 || | || | |||||||||||||||| | |||||||| ||| || | ||| Sbjct 22462943 CGTTCAAAGTTATCTGTAGGCATAGAAACTTCTGTTTCTGGTGCATTTTGAAAATTGAGT 22463002 Query 519 TTTTTGAGATGGTCCATGACATCAGTAAAA-CTATTTGTGTCATTAAAAAATGATTTGAT 577 || | ||| || || |||| ||||| || || || ||| || ||| |||| Sbjct 22463003 TTGTCGAGCTGTTCTATGAT----GTAAAGGCTCTTATCGTTATTTAATGATGGACTGAT 22463058 Query 578 GGCTCTAAAATAAGGCAGGATGGCTGAACTGTTGATGTTGTGTGGTGGCTGGGGGCTCAC 637 ||| | |||||||||||||||||||| |||||||||||| |||| ||| ||| ||| Sbjct 22463059 GGCCTTGAAATAAGGCAGGATGGCTGAGCTGTTGATGTTGCCTGGT-GCTTGGGAGTCAG 22463117 Query 638 AG--AAAAGCACTGCATG-CGGCACGTGCATG----ATTTTACTAATCCCTTATTCTCTT 690 || ||| |||| ||||| || || ||||| | |||| ||||||| Sbjct 22463118 AGGTGAAA------CATGACGGCAAGTCACTGTCGAATTTTTGCACTCCC---TTCTCTT 22463168 Query 691 TCTGCTTCTGTGGAAGGAGAG---GAAATGGGTGAGCATTAGTGTTGTAA-AGCAGTCAG 746 | | | |||||||||||| | |||| ||||||||||| | |||||| | ||| || Sbjct 22463169 TGTTCAGCTGTGGAAGGAGGGAGAGAAAAGGGTGAGCATTGGGTTTGTAATAACAGCTAG 22463228 Query 747 AAACCCTGATAGCT 760 ||| || || ||| Sbjct 22463229 AAATCCCAATGGCT 22463242 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 438507169966000