Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Equus_20caballus_20[refseq_20GCF_5F000002305.2_202007-10-29] 9,637 sequences; 2,474,929,062 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq8 136 8e-27 seq3 127 4e-24 seq10 95.1 2e-14 seq23 87.8 4e-12 >seq8 Length=94057673 Score = 136 bits (150), Expect = 8e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 |||||| ||||| ||||| || | ||||||||||||||||||||| || || || ||||| Sbjct 24467405 ACCTCCCCTCAAGCGCAGGACCAGGTGCAGAGTAGATTCTTTCTGGATGTTGTAGTCAGA 24467464 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 || | | || || || || || || || || ||||| || || || || || || || Sbjct 24467465 CAGGGTGCGCCCATCCTCCAGCTGCTTCCCGGCGAAGATGAGCCTCTGCTGGTCGGGGGG 24467524 Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 || || ||||| || || ||||| || || || || || || || || | || || || Sbjct 24467525 GATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCAC 24467584 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| || || ||||| || |||| ||||| || || |||||||| Sbjct 24467585 CTCCAGGGTGATGGTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCAT 24467632 >seq3 Length=119479920 Score = 127 bits (140), Expect = 4e-24 Identities = 150/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667 || ||||| ||||| || || | || || ||||| | | || |||| | ||| Sbjct 109160483 TGAAGAGTGGATTCCTTTTGATTGTTGTAGTCAGACAAAGCATGTCCATCTTTCATTTGC 109160542 Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || ||||||||||| |||||||| ||||| ||||| ||||||||| |||| || ||||| Sbjct 109160543 TTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCGTATCCTGGATCTTG 109160602 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 || |||| |||||| || ||||| | ||||| || || | ||| || ||||| || || Sbjct 109160603 GCCTTTATATTTTCTATTGTATCCTAGGGTTCAACCTCGAGAGTGATGGTCTTCCCCGTA 109160662 Query 82788 AACGTCTTTACAAATATCTGCAT 82810 | || || || || |||||||| Sbjct 109160663 AGGGTTTTCACGAAAATCTGCAT 109160685 >seq10 Length=83980604 Score = 95.1 bits (104), Expect = 2e-14 Identities = 115/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 60155 TGGTGGTACTATATATCTAAAGGTATAGAATACTTAGATACGGTGTTTTTCATACTTAGG 60214 |||||||||| | | |||||||| | || || ||||| ||||||||||| || | ||| Sbjct 34154405 TGGTGGTACTTTGTGTCTAAAGGAGTGGAGTATTTAGACACGGTGTTTTTTATCTTGAGG 34154346 Query 60215 AAAAAGTTTAATCAGGTTAGTTTTTTACACGTATATCATCATTTTACTATGTTTACTTTA 60274 || || ||||| || ||| | || ||||||||||| | ||| |||||||| || Sbjct 34154345 AAGAAAAACAATCAAGTCTCTTTCCTTCATGTATATCATCACTGTACAATGTTTACGTTG 34154286 Query 60275 GGATGGGTAGGCATTAAATGGTTTGCCGGAGGTCAAG 60311 | ||| | || ||||| ||| | || || || |||| Sbjct 34154285 TGGTGGATTGGAATTAAGTGGGTCGCAGGGGGACAAG 34154249 Score = 84.2 bits (92), Expect = 4e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 60307 TCAAGCATTTTTCGGAGCTCAGTTGAATTCCTTAATCCATGTTATTATGTATACTTATTA 60366 |||||| ||||||||||| ||| |||||||| | |||||||| |||||||| | || || Sbjct 34152956 TCAAGCTTTTTTCGGAGCCCAGATGAATTCCCTCATCCATGTGATTATGTACTCCTACTA 34152897 Query 60367 TGGTATGGCGGCGTGTGGACCTATGTTTAAAAAGTATTTATGGTGGAAGCGTTATCTTAC 60426 || | |||| ||| || | || | |||||| | |||||||| || || || || Sbjct 34152896 CGGCTTAAGTGCGTTTGGCCCATGGATTCAGAAGTATCTTTGGTGGAAACGATACCTGAC 34152837 Query 60427 TATAATGCA 60435 ||| |||| Sbjct 34152836 TATGTTGCA 34152828 >seq23 Length=55726280 Score = 87.8 bits (96), Expect = 4e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 82653 CCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCC 82712 || ||||| ||||| || || ||||| || |||||| | ||||| ||||| |||||| || Sbjct 23152776 CCATCTTCCAGTTGCTTGCCGGCAAAAATGAGTCTTAGCTGATCAGGAGGAATTCCTGCC 23152835 Query 82713 TTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATC 82750 || || || ||||| || ||||||||||| | ||||| Sbjct 23152836 TTGTCCTGGATCTTGGCCTTTACATTTTCTAATGTATC 23152873 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981705969806943