Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Equus_20caballus_20[refseq_20GCF_5F000002305.2_202007-10-29] 9,637 sequences; 2,474,929,062 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq11 152 5e-32 seq8 152 5e-32 seq24 89.7 5e-13 seq4 86.0 6e-12 >seq11 Length=61308211 Score = 152 bits (168), Expect = 5e-32 Identities = 152/197 (77%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 |||||||| ||||| || ||||| || || ||| | ||||| ||||||||||| Sbjct 57863492 GTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCCTCCAGCTGCTTGCCT 57863551 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 || | ||||||| |||||||||||| |||||||| ||||| || |||||| ||| Sbjct 57863552 GCAAAGATGAGCCTCTGCTGGTCGGGGGGGATGCCCTCCTTATCCTGGATCTTGGCCTTC 57863611 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | ||| | |||||| |||||||||| || | ||||| ||| ||||||||||| || Sbjct 57863612 ACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTC 57863671 Query 133644 TTTACGAAAATCTGCAT 133660 || |||||||||||||| Sbjct 57863672 TTCACGAAAATCTGCAT 57863688 Score = 149 bits (164), Expect = 6e-31 Identities = 154/199 (77%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||| ||||||||||| || |||||||| | ||| | | | || || |||||||||| Sbjct 57863263 GGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCA-TCTTCCAGCTGCTTGC 57863321 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | ||||||| |||||||||||| |||||||| ||||| || |||||| || Sbjct 57863322 CTGCAAAGATGAGCCTCTGCTGGTCGGGGGGGATGCCCTCCTTATCCTGGATCTTGGCCT 57863381 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | ||| | |||||| |||||||||| || | ||||| ||| ||||||||||| | Sbjct 57863382 TCACATTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGG 57863441 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || |||||||||||||| Sbjct 57863442 TCTTCACGAAAATCTGCAT 57863460 Score = 145 bits (160), Expect = 7e-30 Identities = 153/199 (77%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||| ||||||||||| || ||||||||| | ||| | | | || || |||||||||| Sbjct 57863719 GGTCGACTCTTTCTGGATGTTGTAATCGGAAAGAGTGCGGCCA-TCTTCCAGCTGCTTGC 57863777 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | ||||||| |||||||||||| |||||||| ||||| || |||||| || Sbjct 57863778 CTGCAAAGATGAGCCTCTGCTGGTCGGGGGGGATGCCCTCCTTATCCTGGATCTTGGCCT 57863837 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | ||| | |||||| |||||||||| || | ||||| ||| ||||||||||| | Sbjct 57863838 TCACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGG 57863897 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || || || |||||||| Sbjct 57863898 TCTTCACAAAGATCTGCAT 57863916 >seq8 Length=94057673 Score = 152 bits (168), Expect = 5e-32 Identities = 152/197 (77%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 |||||||| ||||| || ||||| || || ||| | ||||| |||||||| || Sbjct 24467892 GTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCCTCCAGCTGCTTCCCG 24467951 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 ||| | ||||||| |||||||||||| |||||||| |||||||| |||||| |||| Sbjct 24467952 GCGAAGATGAGCCTCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTG 24468011 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | ||| | |||||| |||||||||| || | ||||| || || |||||||| || Sbjct 24468012 ACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATCGTCTTCCCGGTCAGGGTC 24468071 Query 133644 TTTACGAAAATCTGCAT 133660 || |||||||||||||| Sbjct 24468072 TTCACGAAAATCTGCAT 24468088 Score = 152 bits (168), Expect = 5e-32 Identities = 152/197 (77%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 |||||||| ||||| || ||||| || || ||| | ||||| |||||||| || Sbjct 24468120 GTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCCTCCAGCTGCTTCCCG 24468179 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 ||| | ||||||| |||||||||||| |||||||| |||||||| |||||| |||| Sbjct 24468180 GCGAAGATGAGCCTCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTG 24468239 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | ||| | |||||| |||||||||| || | ||||| ||| || || ||||| || Sbjct 24468240 ACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTCCCCGTCAGGGTC 24468299 Query 133644 TTTACGAAAATCTGCAT 133660 || |||||||||||||| Sbjct 24468300 TTCACGAAAATCTGCAT 24468316 Score = 149 bits (164), Expect = 6e-31 Identities = 151/197 (77%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 || || |||||||| || ||||| || || ||| | ||||| |||||||| || Sbjct 24467436 GTAGATTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCCTCCAGCTGCTTCCCG 24467495 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 ||| | ||||||| |||||||||||| |||||||| |||||||| |||||| |||| Sbjct 24467496 GCGAAGATGAGCCTCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTG 24467555 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | ||| | |||||| |||||||||| || | ||||| ||| || || ||||| || Sbjct 24467556 ACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTCCCCGTCAGGGTC 24467615 Query 133644 TTTACGAAAATCTGCAT 133660 || |||||||||||||| Sbjct 24467616 TTCACGAAAATCTGCAT 24467632 Score = 149 bits (164), Expect = 6e-31 Identities = 151/197 (77%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 |||||||| ||||| || ||||| || || ||| | ||||| |||||||| || Sbjct 24467664 GTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCCTCCAGCTGCTTCCCG 24467723 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 ||| | ||||||| |||||||||||| |||||||| ||||| || |||||| |||| Sbjct 24467724 GCGAAGATGAGCCTCTGCTGGTCGGGGGGGATGCCCTCCTTATCCTGGATCTTGGCCTTG 24467783 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | ||| | |||||| |||||||||| || | ||||| ||| || || ||||| || Sbjct 24467784 ACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTCCCCGTCAGGGTC 24467843 Query 133644 TTTACGAAAATCTGCAT 133660 || |||||||||||||| Sbjct 24467844 TTCACGAAAATCTGCAT 24467860 Score = 149 bits (164), Expect = 6e-31 Identities = 151/197 (77%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 |||||||| ||||| || ||||| || || ||| | ||||| |||||||| || Sbjct 24468348 GTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCCTCCAGCTGCTTCCCG 24468407 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 ||| | ||||||| |||||||||||| |||||||| |||||||| |||||| |||| Sbjct 24468408 GCGAAGATGAGCCTCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTG 24468467 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | ||| | |||||| |||||||||| || | ||||| ||| || || ||||| || Sbjct 24468468 ACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTCCCCGTCAGGGTC 24468527 Query 133644 TTTACGAAAATCTGCAT 133660 || ||||| |||||||| Sbjct 24468528 TTCACGAAGATCTGCAT 24468544 >seq24 Length=46749900 Score = 89.7 bits (98), Expect = 5e-13 Identities = 115/156 (74%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 ||||| |||| ||||||| ||| || ||||||||||| || |||||| || ||| Sbjct 44055530 TCCTCCAGCTATCTGCCCGCACAAACCAGACGCTGCTGGTCAGGCAAGATGCCCTCGTTG 44055589 Query 133566 TCGGTGATCTTTTGCTTGAGC-TGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGAC 133624 || ||| ||| |||| | | | |||| ||||| ||| ||| || |||| ||||| Sbjct 44055590 TCTTGGAT-TTTAGCTTTAACATTCTCAGTGGTGTCACTGGCCTCGACCTCGAAGGTGAT 44055648 Query 133625 GGTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||| ||||| ||||| || || || || |||||||| Sbjct 44055649 GGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 44055684 >seq4 Length=108569075 Score = 86.0 bits (94), Expect = 6e-12 Identities = 139/195 (71%), Gaps = 4/195 (2%) Strand=Plus/Minus Query 133468 ACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCCCGCG 133526 |||||||||| |||||||| || | ||| | | | ||||| ||||| |||||| | Sbjct 2126687 ACTCTTTCTGGATATTGTACTCTGTAAGAGTGAGGCCA-TCCTCTAGCTGTTTGCCCACA 2126629 Query 133527 TAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC-TTGAG 133585 ||| || | |||||||||||| ||||||| |||||||| || ||| || |||| Sbjct 2126628 AAAACCAGACACTGCTGGTCGGGCAGGATGCCCTCCTTGTC-TTGGGTTTTAGCTTTGAC 2126570 Query 133586 CTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTT 133645 | |||| ||||| |||||| || || | |||| ||| || || |||| || | Sbjct 2126569 ATTCTCAGTGGTGTCACTGGGCTGGACTTCAAGAGTGATGGTCTTCCCCATCAGGGTCTC 2126510 Query 133646 TACGAAAATCTGCAT 133660 || || |||||||| Sbjct 2126509 CACAAAGATCTGCAT 2126495 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483362565921880