Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Equus_20caballus_20[refseq_20GCF_5F000002305.2_202007-10-29] 9,637 sequences; 2,474,929,062 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq23 277 2e-69 seq19 194 2e-44 seq10 161 1e-34 >seq23 Length=55726280 Score = 277 bits (306), Expect = 2e-69 Identities = 619/927 (67%), Gaps = 7/927 (1%) Strand=Plus/Plus Query 162059 CCAGGGACTTATGTCGGAGATACTCGTCTAGACACTGGACCGCGAACACGTCTCGTTCCT 162118 |||||| ||||| | |||| ||| || | |||||||| || || | ||| ||| Sbjct 14980075 CCAGGGCTTTATGCCTCAGATGCTCATCCAAACACTGGATGGCAAAGAGGTCAATGTCCG 14980134 Query 162119 CATCGAACTTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCCCG 162178 || ||||| || || |||| ||| ||| | | || |||| || | || || | Sbjct 14980135 TGTCAAACTTATTGGCAAACAAGTGGTGCATGCGCAGCA---TCCAGTTCAAGTCACCTG 14980191 Query 162179 ATCCGAACACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCAT 162238 ||| || |||||||| || || ||||| || |||||||| || || || |||| || | Sbjct 14980192 CTCCAAAGACGCACACAGAACGAACGTGGACCCCGCTGCAGGGTGGGTAGGGGGCACCCT 14980251 Query 162239 CGTCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGG 162298 | | || || || |||| |||||||| || || |||| || || |||||||||| Sbjct 14980252 TGGAAATGTCACCTTCAAAGTACTGCCACTTGACAAATCTAGCAATCGCATGCATGTCGG 14980311 Query 162299 AGGTGTCGTACTTGTACACTGACGGCACGGCTCCAGGAACACCCGGCAGTCTCTGTAGAG 162358 | |||| ||||| | | | | || | || || || | || | | ||| |||| Sbjct 14980312 ACATGTCATACTTATGGCTTAAGGACAGCGAGCCTGGGACTTCAGGGATCCGCTGAAGAG 14980371 Query 162359 TAGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCCTGA 162418 | ||||| || | || || || || || || || || | ||||||||| |||| | || Sbjct 14980372 TGGCCCAGAGATACTCATCCGGGCTGTATGTGTCTTTGGCCCACTCCATAAACTTCTGGA 14980431 Query 162419 CCGTTTTATCGTATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCGCTAC 162478 ||| || | ||||| ||| || || ||| | || | ||| || || || | Sbjct 14980432 TTTTTTCATTCTCTAGAACGTACTCCACATACTCCCTACTGACCACAAAATAGGCACTGC 14980491 Query 162479 CAGAAAACACGGGTATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTTGACTACCA 162538 | ||||||| || | | ||||||| || ||||||| || ||||| | | Sbjct 14980492 CTGAAAACAGAGGCGTTTCAAGAGGAGGGTGCACTTTGTCAGTCCCTGTGTTTGTCAGCT 14980551 Query 162539 TTCCCTCTACGACCACGTGTCTCTTCCTCCACCTGGCCATCTTACTGGTAGACGGGTGTT 162598 |||| | |||||| | | ||| ||||||| | | ||| ||| | | | Sbjct 14980552 TTCCATTTACGACTGCATAATGCTTTTTCCACCTTTCTTTTTTATTGGATGGCATTCTCT 14980611 Query 162599 CGGTCTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTAGATTGG 162658 | || ||||| |||| ||| || | ||| |||| | || || || || |||| Sbjct 14980612 CAGTTTCTAGGTTGTTTTCTCCCATTAACGACTTGAGCTTCCTGACAATTTCCAGGTTGG 14980671 Query 162659 TCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCTGAGTC 162718 | |||| ||||| || | || || ||||| || | || ||||| | | || | || Sbjct 14980672 TTTTAATAGGAAAATCCATACCACAAAGATTGATCAAGTACTTCCAGTCTGCACTCATTC 14980731 Query 162719 CGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTACACGA 162778 ||| || ||||| | ||||| || || ||||| ||||||||||| || |||||||| | Sbjct 14980732 TGTAGAGGTCCTGCATGCAGTTGAGGTCAGCCTGAACGCGACTCCATGAGGCGTACACCA 14980791 Query 162779 CGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCATCACGG 162838 ||||||||| | | |||| ||||||||||| |||||| || | || || ||||| | Sbjct 14980792 CGCTCTCCAGCTGACTGGCCACAAAGACATTACTGAAACAGGATGCGATGCCAATCACCG 14980851 Query 162839 CCAGTGAGAA--CATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTCTGAGG 162896 || | || ||| || | ||| || || || || | ||| || | |||||| || Sbjct 14980852 CCGCCAAAAAGGAATC--CTCTGATTTTCTGTCCACATGAATGCAATAGAAATTCTGTGG 14980909 Query 162897 GGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACGATAGA 162956 ||||||||||||||| | || || | ||| || || || || || || || ||||| Sbjct 14980910 CATGTAGATGGCCCTCAGGAGCCTGTCAAGCATTTCAATTTTGTGATGAACGACTATAGA 14980969 Query 162957 ATACGCTATGGGGAACTCAGCCTCCTC 162983 ||| ||||| || ||||| ||||| || Sbjct 14980970 ATATGCTATTGGAAACTCTGCCTCTTC 14980996 >seq19 Length=59975221 Score = 194 bits (214), Expect = 2e-44 Identities = 236/322 (73%), Gaps = 0/322 (0%) Strand=Plus/Plus Query 171771 CATAGAGTGTCAGACAGGTCTTACCCGATATTTTTCCGGACCCAAAAGTATTAAACAAAC 171830 || |||| || || |||| || || || || ||||| ||||| ||||| || | | Sbjct 45341603 CAGAGAGGGTAAGGCAGGCTACTCCTGAGATCTTCCCGGAACCAAAGGTATTGAAGAGGC 45341662 Query 171831 ACATAAAACAGCCTTCGTCCTCCACGGTGGTGTTCCAAAAAGTCAATGTAGAATTTCTGA 171890 | | |||| || || ||||||| |||||| ||||| || || | || || || || Sbjct 45341663 AATTGTAACACCCCTCATCCTCCAGGGTGGTATTCCAGAAGGTAATGGTTGAGTTCTGGA 45341722 Query 171891 GTCCGAGTTGCGTAATGTTCACCCGGTCCTTGTACGGAGGCTGGACGACAACACCGTGAT 171950 |||| || || || ||||| | | ||| || || | ||||||||| ||||| ||||| | Sbjct 45341723 GTCCTAGCTGAGTGATGTTTATCTTGTCTTTATAAGCAGGCTGGACCACAACCCCGTGGT 45341782 Query 171951 TCTCGCTGAACGTGGCCATGTTTTCGGGGCTCGTAGCCTTTATCTTCTGCCACGTTACTA 172010 || |||||| ||| ||||||||| ||| |||||| ||| || |||||||| || || | Sbjct 45341783 CCTTGCTGAAGGTGATCATGTTTTCTGGGATCGTAGGCTTGATTTTCTGCCATGTCACAA 45341842 Query 172011 TTAAAACTTCTTTGTCGGTTTGAAGAGAGCATCTTAAAGAAGCAGGTGTGTTCAATAATT 172070 | || ||||| | | ||||| || |||||| |||| |||||||||||||||| | Sbjct 45341843 TCAAGACTTCCTGGGAAGTTTGCAGGGAGCATTTTAAGGAAGCAGGTGTGTTCAGCAGCA 45341902 Query 172071 CCCTTTCGTCTTGCGTTACCAC 172092 | ||||| ||||| || ||||| Sbjct 45341903 CTCTTTCATCTTGGGTCACCAC 45341924 Score = 87.8 bits (96), Expect = 2e-12 Identities = 171/251 (68%), Gaps = 9/251 (4%) Strand=Plus/Plus Query 171503 ACAGTTTGTCTGATGTCTGTTACAGTCCCCAAGTGTAAGACTTTGCATATCACCTCCTCG 171562 ||||||| |||| || || ||| |||||| ||| | |||| ||| |||||||||| Sbjct 45339251 ACAGTTTCCCTGAGGTTGGTCACATTCCCCAGGTGCCACACTTGGCAGATCACCTCCT-- 45339308 Query 171563 TTTCCCACTTGACTTTTAGGATCTTTTACTTGAAGAATGCTAGTAACAGATGTAGTCCCG 171622 | |||| ||||| || || ||||| || || || | ||| || ||||| || ||||| Sbjct 45339309 -TCCCCAACTGACTCTTGGGGTCTTTGACCTGGAGGACGCTGGTCACAGACGTGGTCCCA 45339367 Query 171623 TTACGATGT---AGAACGGTTTTAGTACTATTTTCTATTCCGGATCCGGCAACTTTCCAA 171679 || ||| ||||| | | |||| || || || | || || | | ||||| Sbjct 45339368 TTGGAGTGTGAGAGAACC---TCACTACTGTTCTCAATCTCCGACCCAGAGATCTTCCAG 45339424 Query 171680 AATATAACAGGAGCTGGTCTAGCAGTAGCAGAGCAAGTTATGTTTAATCCATCTTCGAAG 171739 || || ||| | ||| | ||| | ||||||||||| || |||| || || ||| Sbjct 45339425 AAGATCTGAGGGGGTGGGCGGGCATTGGCAGAGCAAGTGATATTTAGGTGGTCGTCAAAG 45339484 Query 171740 AACTCATAGTG 171750 || | |||||| Sbjct 45339485 AATTTATAGTG 45339495 >seq10 Length=83980604 Score = 161 bits (178), Expect = 1e-34 Identities = 453/682 (66%), Gaps = 19/682 (3%) Strand=Plus/Minus Query 176887 TCCAGTTAAAGTATTGAAGATAAAGGGTGACGTTTTTATCGATGGCGTTGAGGTGCGAGG 176946 ||||||||||||| ||| || | | ||||||| || | | || || | | | Sbjct 47809098 TCCAGTTAAAGTAACTAAGGTATAACTTATCGTTTTTGTCAACCTCCTTCAGATACTTTG 47809039 Query 176947 CCAGTTCTATAGGGGACGTGTAGTCGTTCACGTGAATGAAAGCGTCTCCCGGGACGTAAT 177006 | || || | || || | || || | ||| |||||||| | ||| | || | |||| Sbjct 47809038 CTAGCTCACTGGGAGAGTTATAATCCTCCACATGAATGAATGAATCTGCTGGAATATAAT 47808979 Query 177007 TTTCGTAATTCTCTCTCGATGTTCCGAGTACTATGGGTACCGCACCTGCCATAAGAGATC 177066 |||| || || || || |||| || || || | ||||| | || |||| || || Sbjct 47808978 TTTCATAGTTTTCCCTAGATGGCCCCAGAACAACAGGTACAGAGCCAGCCAGAAAAGCAT 47808919 Query 177067 GGTAGAGTTTTTCGGTAATATAGTCCCTGTGTACGGAGTTCTCAAACGCGAGATAGAATT 177126 |||||| ||||| || || || || |||| | |||||| ||||| | ||||| |||| Sbjct 47808918 TGTAGAGCTTTTCTGTGATGTAATCTTTGTGGATGGAGTTTTCAAAGGAAAGATAAAATT 47808859 Query 177127 TACAGGAAGATA--GTAGCGGGATGAAGTCATCATCGGGTATATAATCTCCTACTACGTT 177184 | || | ||||| ||| || || || | | ||| | ||| ||||| | | | | Sbjct 47808858 TGCAAGTAGATATGGTA--GGAATCAAATTTTTATCATTCACATACTCTCCAAATGCTTG 47808801 Query 177185 CCCGTATACATGTATATCTATGTGTTTACTGAGCTCTAGGTAGTATCTCGA-TCTCACGT 177243 ||| || ||| || || || ||| || || || ||| || || || || ||| Sbjct 47808800 CCCATAGGTATGGATTTCAATACTTTTGCTTAGTTCATTGTAATA-CTTGACCCTGGCGT 47808742 Query 177244 GGTCGTTGTTCCAATTGCTGACGACCCAGCAAACTAACTTGCTCTTTGC-GGGAACGGGA 177302 | || |||||| || || || |||||||| |||||||| |||||||| || || Sbjct 47808741 GCTCAGGGTTCCAGTTACTTACAACCCAGCACACTAACTT-CTCTTTGCTTGGCAC---- 47808687 Query 177303 TTC-GATACTAATGCAGTGTCT-CTGAGCGTTAGTGATCCATAGGGCACGTGAATATCCG 177360 ||| | || || | || | | || | ||| | | ||||| ||||| || ||||| | Sbjct 47808686 TTCAAACACGAA-GGGGTTTGTGCTCACCGTCAAGAAGCCATAAGGCACTTGGATATCTG 47808628 Query 177361 AGTCGCGTCTGTACGTTAACGTGAGATTGAAAAGGTTTTCTATAC--CTTGTTTGAAGGG 177418 ||||||| | || || | || |||||||| |||| || |||| || |||| ||| Sbjct 47808627 AGTCGCGGCGATAAGTCAGAGTCAGATTGAACAGGTGCTCAATACCACTCTTTTG--GGG 47808570 Query 177419 GCTGTTACTGGGCGATTCTAAGTTCATCCATATCCACTTTTGAAAGGTTGGTCTGGGTTC 177478 ||| | |||| ||||| || |||||||| ||||| || || |||| ||| || | | Sbjct 47808569 TGTGTGAGTGGGTGATTCCAAATTCATCCAGATCCATTTCTGGAAGGGTGGCCTAGCCTG 47808510 Query 177479 CGTAGGTAGAGTATAAGGATCTATACTTATCTCTCTGTGGTGAAAGACTACGGCATTGGC 177538 | ||||| | || |||| ||| || |||| ||| || | | || |||| | Sbjct 47808509 CTGAGGTAAATTAGTCAGATCCCAACTGATGTCTCGGTGATGGATCAGAACTGCATGAGA 47808450 Query 177539 TTTGTAATAAACAGATCTGTCT 177560 ||||| || | ||| | |||| Sbjct 47808449 TTTGTTGTACAGAGAACGGTCT 47808428 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578362320635200