Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Equus_20caballus_20[refseq_20GCF_5F000002305.2_202007-10-29] 9,637 sequences; 2,474,929,062 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq11 89.7 1e-12 seq8 86.0 1e-11 >seq11 Length=61308211 Score = 89.7 bits (98), Expect = 1e-12 Identities = 149/215 (69%), Gaps = 3/215 (1%) Strand=Plus/Minus Query 206164 AAAATGTACCAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAA 206223 |||||| ||||| ||| || || || || || || || ||||| |||| ||||| Sbjct 57863919 AAAATG---CAGATCTTTGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAG 57863863 Query 206224 AGTTCTGACACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCG 206283 ||||| |||| || ||| ||||| || || || || || || || Sbjct 57863862 CCCAGCGACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAGGGCATCCCCCCC 57863803 Query 206284 GACGCTCAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGAT 206343 ||| || || || ||||| || || |||||| |||||||||| | ||| | ||||| Sbjct 57863802 GACCAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCCGAT 57863743 Query 206344 TACAACGTCCAGAAAGAGTCTACTCTTCACCTTGT 206378 |||||| ||||||||||||| || || ||||| || Sbjct 57863742 TACAACATCCAGAAAGAGTCGACCCTGCACCTGGT 57863708 >seq8 Length=94057673 Score = 86.0 bits (94), Expect = 1e-11 Identities = 70/85 (82%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 204764 ACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCC 204823 || ||||| |||||||| |||||||||| || ||||||| || || | ||||| ||| Sbjct 24467424 ACCAGGTGCAGAGTAGATTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCCTCC 24467483 Query 204824 AGCTGCTTTCCGGCGAAGATAAGCC 204848 |||||||| ||||||||||| |||| Sbjct 24467484 AGCTGCTTCCCGGCGAAGATGAGCC 24467508 Score = 84.2 bits (92), Expect = 5e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || || || ||||| |||| ||||| ||||| |||| Sbjct 24467617 AAGACCCTGACGGGGAAGACCATCACCCTGGAGGTGGAGCCCAGCGACACCATCGAGAAC 24467558 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || || || || || ||| || || || |||||| Sbjct 24467557 GTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAGAGGCTCATCTTC 24467498 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| |||||| |||| ||||| | || || | || |||||| |||||||||| ||| Sbjct 24467497 GCCGGGAAGCAGCTGGAGGATGGGCGCACCCTGTCTGACTACAACATCCAGAAAGAATCT 24467438 Query 206365 ACTCTTCACCTTGT 206378 ||||| ||||| || Sbjct 24467437 ACTCTGCACCTGGT 24467424 Score = 84.2 bits (92), Expect = 5e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || || |||||||| |||| ||||| ||||| |||| Sbjct 24468073 AAGACCCTGACCGGGAAGACGATCACCCTGGAGGTGGAGCCCAGCGACACCATCGAGAAC 24468014 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || || || || || ||| || || || |||||| Sbjct 24468013 GTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAGAGGCTCATCTTC 24467954 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| |||||| |||| ||||| | || || | || |||||| ||||||| ||||| Sbjct 24467953 GCCGGGAAGCAGCTGGAGGATGGGCGCACCCTGTCTGACTACAACATCCAGAAGGAGTCC 24467894 Query 206365 ACTCTTCACCTTGT 206378 ||||| ||||| || Sbjct 24467893 ACTCTGCACCTGGT 24467880 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181674875784677