Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Equus_20caballus_20[refseq_20GCF_5F000002305.2_202007-10-29] 9,637 sequences; 2,474,929,062 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq19 370 1e-97 seq16 221 1e-52 seq5 178 2e-39 seq8 174 2e-38 >seq19 Length=59975221 Score = 370 bits (410), Expect = 1e-97 Identities = 274/320 (86%), Gaps = 0/320 (0%) Strand=Plus/Minus Query 171072 GTGGTGACCCAGGATGAGAGGGTGCTGCTGAACACGCCAGCCTCCCTGAAATGCTCCCTG 171131 ||||||||||| ||||| || |||||||||||||| || || ||| | |||||||||||| Sbjct 45341924 GTGGTGACCCAAGATGAAAGAGTGCTGCTGAACACACCTGCTTCCTTAAAATGCTCCCTG 45341865 Query 171132 CAGACTTCTCAGGAGGTGCTGATTGTCACCTGGCAGAAAATCAAGCCCACCATTCCAGAG 171191 || ||||| ||||| || ||||||| || ||||||||||||||||| || || ||||| Sbjct 45341864 CAAACTTCCCAGGAAGTCTTGATTGTGACATGGCAGAAAATCAAGCCTACGATCCCAGAA 45341805 Query 171192 AACATGATAACTTTTAGCAAAGACCACGGGGTGGTGGTCCAGCCGGCTTATAAGGACAAG 171251 |||||||| || || ||||| ||||||||||| ||||||||||| |||||||| |||||| Sbjct 45341804 AACATGATCACCTTCAGCAAGGACCACGGGGTTGTGGTCCAGCCTGCTTATAAAGACAAG 45341745 Query 171252 ATAAACATCACCCAGCTTGGACTCCAAAACTCAACCATCACTTTTTGGAATACCACCTTA 171311 ||||||||||| ||||| |||||||| ||||||||||| || || |||||||||||| | Sbjct 45341744 ATAAACATCACTCAGCTAGGACTCCAGAACTCAACCATTACCTTCTGGAATACCACCCTG 45341685 Query 171312 GAGGACGAGGGGTGCTACAACTGCCTCTTTAACACCTTTGGGTCTGGGAAAATCTCGGGG 171371 ||||| |||||||| ||||| |||||||| || |||||||| || ||||| ||||| || Sbjct 45341684 GAGGATGAGGGGTGTTACAATTGCCTCTTCAATACCTTTGGTTCCGGGAAGATCTCAGGA 45341625 Query 171372 GTGGCCTGCCTCACCCTCTC 171391 || |||||||| |||||||| Sbjct 45341624 GTAGCCTGCCTTACCCTCTC 45341605 Score = 307 bits (340), Expect = 1e-78 Identities = 237/282 (84%), Gaps = 0/282 (0%) Strand=Plus/Minus Query 171388 TCTCNGTGCAGCCCACTGTGTTTCTGCATTATAAATTTTTTGATGACCACCTGAACATCA 171447 || | || |||||||| || || || || |||||||| ||||| |||||||| || |||| Sbjct 45339521 TCCCAGTACAGCCCACAGTATTCCTTCACTATAAATTCTTTGACGACCACCTAAATATCA 45339462 Query 171448 CCTGTTCTGCCAATGCCCGCCCGCCACCTCAGATTTTTTGGAAGATTTCGGGGTCAGAAA 171507 | || ||||||||||||||||| || |||||||| || |||||||| || ||||| || | Sbjct 45339461 CTTGCTCTGCCAATGCCCGCCCACCCCCTCAGATCTTCTGGAAGATCTCTGGGTCGGAGA 45339402 Query 171508 TTGAAAACAGTAGCGAGGTTCTTTCCCATTCTAATGGAACTACTTCTGTAACCAGTGTAC 171567 |||| |||||||| |||||||| || || || ||||| || || ||||| ||||| || | Sbjct 45339401 TTGAGAACAGTAGTGAGGTTCTCTCACACTCCAATGGGACCACGTCTGTGACCAGCGTCC 45339342 Query 171568 TCCAAGTTAAAGACCCCAAGAGTCAGTTGGGAAAGGAGGTTATCTGCCAAGTGTGGCACC 171627 |||| || ||||||||||||||||||||||| |||||||| ||||||||||||||||||| Sbjct 45339341 TCCAGGTCAAAGACCCCAAGAGTCAGTTGGGGAAGGAGGTGATCTGCCAAGTGTGGCACC 45339282 Query 171628 TGGGAAATGTAACTAACTTAAGGGAAACTGTAAGCAAGGGTA 171669 |||| ||||| || ||| | ||||||||||| ||||| |||| Sbjct 45339281 TGGGGAATGTGACCAACCTCAGGGAAACTGTGAGCAAAGGTA 45339240 >seq16 Length=87365405 Score = 221 bits (244), Expect = 1e-52 Identities = 557/838 (66%), Gaps = 29/838 (3%) Strand=Plus/Minus Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669 ||| ||||||||| | || |||| || | |||||| ||||| | | |||||| Sbjct 40490916 GTATTCTCTGGTGGTCGTGATTGGTCTGCTGGGCAATCTGATGGTGGTGGTGATCCTCAC 40490857 Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729 ||| |||||||||||| |||| ||||||||||||||||||||||| |||| || ||| Sbjct 40490856 AAAATACAAGAGGCTCCGGATTATGACCAACATCTTCCTGTTCAATTTGGCAATTTCTGA 40490797 Query 8730 CCTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACTTCCACTCGGGGGGAACTGGTGG 8789 | |||| | ||||||| || || || ||||||||| | | || |||| || Sbjct 40490796 CTTGCTCTTTCTTTTCACTCTGCCATTCTGGATTCAC-TATGTTTGGCGGGA-----TGA 40490743 Query 8790 GTGGGACGCCGACCACCACATGTGTAAGTTTATAGTGGGCCTTTGCAACGTGGCACTGTA 8849 ||||| | ||| |||||||||||||| | | || ||||| || || |||| Sbjct 40490742 GTGGGTTTTTGGCCATCACATGTGTAAGTTCCTCATTGGGCTTTGTTACACGGGCTTGTA 40490683 Query 8850 CAGCGAAGTCCTGTTTATCATCCTGTTGACTCTGGACAGGTATCTTGCAGTTGTGTACGC 8909 |||||| || | || |||||||||||||| || ||| ||||||| || | || |||| Sbjct 40490682 CAGCGAGATCTTTTTCATCATCCTGTTGACGCTAGACCGGTATCTGGCCATCGTCCACGC 40490623 Query 8910 GGTGGCTTACAGGCTGGTCCGCGTGGTACCAATAGGCATCCTCGCCAGCCTCCTGGCCTG 8969 ||| | | | ||| || | | |||||| | |||| || | |||| Sbjct 40490622 TGTGTTTGCCCTTCGAACCCGGACCGTCACTTTTGGCATCATAACCAGTGTCTTCACCTG 40490563 Query 8970 GATTCTGGCTGTGTTGGGAACCATGCCAGAGTTTATCTTTTATGAATCCAATAATGCCAC 9029 | ||||| | | | | | || | || || |||||||| ||| | | | | | Sbjct 40490562 GGGCCTGGCAGGGCTAGCAGCCCTCCCTGAATTTATCTTCCATGGGTTCCAAGAGGAATT 40490503 Query 9030 AGGCAAGGGGGTCTGCCAAGCCTCCTACACAG------------ACTTTTGGAAGGGGGT 9077 || || ||||||| | | |||| ||| | | |||||| | Sbjct 40490502 TGGTCAGTATGTCTGCCTTCCTTTCTACCCAGAAGCAGCAGAAAATATCTGGAAGAGTAC 40490443 Query 9078 TGATGTTACCAGCATGACCATGGTCACCCTCATCCTGCCTTTGCTTATCATGGCCTTCTG 9137 ||||| || |||| || | | ||| ||||||||||| || ||||| |||| Sbjct 40490442 CCATGTTCTGAGAATGAATATCTTGAGTCTCGCTCTGCCTTTGCTCATTATGGCTGTCTG 40490383 Query 9138 CTACTGGAAAATCATCAAGGTCCTCCTCA-AGGCCCACAACAGGTCGAGAAACCTGCACG 9196 ||||| |||||| || || || | | | || |||| || ||| | | Sbjct 40490382 CTACTCAGGAATCATTAAAACACTGCTGAGATGTCC-TAACA---AGAAAAAGTACAAGG 40490327 Query 9197 CCGTCAAGCTCATTTTGATCATGGTGGTGCTTTATTTTGTCTTTTGGATCCCCTACAACG 9256 || || ||||||||| |||| ||||| | | ||| || || ||| || |||||| Sbjct 40490326 CCATCCGGCTCATTTTTGTCATCATGGTGGTCTTTTTCGTTTTCTGGGCACCTTACAACC 40490267 Query 9257 TCCTGCTCATTTTACACACCTACCAAGAGGCCATTTTTGGG-CCAGACTGTGA--AGCGC 9313 | | ||| |||| ||| | ||| || | ||||| |||| |||||| || || Sbjct 40490266 TGGTTCTCTTTTTCTCCACTTTTCAAACAACCTTCCTTGGGACCAG-CTGTGATCAGAGC 40490208 Query 9314 GGCGCAGGGTGGACATGGCCCTCTTGGTGGCTGAGATGATCGCCTGCACCCACTGCTGCG 9373 || | ||||||||||||| ||||| | ||||||||||||| ||| |||||||| | Sbjct 40490207 -AAACA-GCTGGACATGGCCCTGCTGGTGACAGAGATGATCGCCTACACGCACTGCTGTG 40490150 Query 9374 TCAACCCCGTCATCTACGCGTTTGTGGGCGAAAAGTTCCAACAGAACCTTCAGGACTT 9431 ||||||| || |||||||| ||||| ||||| | |||||| ||||||| || |||| Sbjct 40490149 TCAACCCTGTGATCTACGCATTTGTTGGCGAGAGGTTCCAGAAGAACCTCCACCACTT 40490092 Score = 127 bits (140), Expect = 2e-24 Identities = 123/158 (78%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669 |||||||||||||||| | |||| || | ||||| ||||||| |||| |||||||| Sbjct 40532626 GTACTCTCTGGTGTTTGTCATTGGCCTGGTCGGCAACATCCTGGTGGTCCTGGTCCTCAT 40532685 Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729 | ||||||||||||| | ||||||| ||||| ||| ||||||||||| || ||| Sbjct 40532686 GCAATACAAGAGGCTCAAAAGTATGACCAGCATCTACCTTCTCAACCTGGCCATTTCTGA 40532745 Query 8730 CCTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACT 8767 |||||| | | ||||| || ||||| |||||| ||| Sbjct 40532746 CCTGCTCTTCCTCTTCACGCTGCCCTTCTGGATTGACT 40532783 Score = 82.4 bits (90), Expect = 9e-11 Identities = 78/100 (78%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 9323 TGGACATGGCCCTCTTGGTGGCTGAGATGATCGCCTGCACCCACTGCTGCGTCAACCCCG 9382 ||||| ||||| | ||| | ||| ||||||||| ||| ||||||||||||||||| | Sbjct 40533342 TGGACCTGGCCATACAAGTGACAGAGGTGATCGCCTACACGCACTGCTGCGTCAACCCTG 40533401 Query 9383 TCATCTACGCGTTTGTGGGCGAAAAGTTCCAACAGAACCT 9422 | ||||||| ||||| ||| | | ||||| | || |||| Sbjct 40533402 TGATCTACGTCTTTGTCGGCCAGAGGTTCCGAAAGTACCT 40533441 >seq5 Length=99680356 Score = 178 bits (196), Expect = 2e-39 Identities = 138/167 (83%), Gaps = 12/167 (7%) Strand=Plus/Minus Query 178231 AGGGTTACTTGGGTTGCCAGGCCTTGTCAGAGATGATTCAGTTTTACTTGGAGGAGGTGA 178290 |||||||| |||||||||| |||||||| |||||||| ||||||||| |||||||||||| Sbjct 2989802 AGGGTTACCTGGGTTGCCAAGCCTTGTCGGAGATGATCCAGTTTTACCTGGAGGAGGTGA 2989743 Query 178291 TGCCTCAGGCCGAGAATCACAGCGGGGGTGGAGGCCCGGACATTAAGGAGCATGTAAACT 178350 |||| ||||| ||||| ||| ||||| ||||| |||||||| || |||| Sbjct 2989742 TGCCCCAGGCTGAGAACCAC------------GGCCCAGACATCAAGGAGCACGTGAACT 2989695 Query 178351 CTCTGGGGGAAAAGCTAAAGACCCTTAGAGTGAGGCTGCGGCGATGT 178397 | |||||||||||||| |||||||| |||||||||||||||| ||| Sbjct 2989694 CCCTGGGGGAAAAGCTGAAGACCCTCCGAGTGAGGCTGCGGCGCTGT 2989648 Score = 104 bits (114), Expect = 3e-17 Identities = 78/92 (85%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 178081 AGTCTGAAAACAATTGCACTCACTTTCCAACCAGTTTGCCTCACATGCTCCATGAGCTCC 178140 ||||||| |||| ||||| ||||| |||||||| |||| ||||||||||||||||||| Sbjct 2991043 AGTCTGAGAACAGCTGCACCCACTTCCCAACCAGCCTGCCCCACATGCTCCATGAGCTCC 2990984 Query 178141 GGGCCGCTTTTAGCAGAGTAAAGACttttttt 178172 | ||||| || ||||| || |||||||| ||| Sbjct 2990983 GAGCCGCCTTCAGCAGGGTGAAGACTTTCTTT 2990952 Score = 98.7 bits (108), Expect = 1e-15 Identities = 74/87 (85%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 178462 AGCTTCAAGAAAAGGGTGTTTACAAAGCTATGAGTGAGTTTGATATTTTTATTAACTACA 178521 |||| ||||| || ||||| |||||||| |||||||||||||| || || || ||||||| Sbjct 2987479 AGCTCCAAGAGAAAGGTGTCTACAAAGCCATGAGTGAGTTTGACATCTTCATCAACTACA 2987420 Query 178522 TAGAAGCTTACATGACAACAAAAATGA 178548 ||||||| || |||||||| || |||| Sbjct 2987419 TAGAAGCCTATATGACAACGAAGATGA 2987393 Score = 96.9 bits (106), Expect = 4e-15 Identities = 58/61 (95%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 178173 CAAATGAAGGACCAGCTGGACAACATGTTGTTAAATGGGTCCCTGCTGGAAGACTTTAAG 178232 |||||||||||||||||||||||||||||||| || |||||||||||||| ||||||||| Sbjct 2990130 CAAATGAAGGACCAGCTGGACAACATGTTGTTGAACGGGTCCCTGCTGGAGGACTTTAAG 2990071 Query 178233 G 178233 | Sbjct 2990070 G 2990070 >seq8 Length=94057673 Score = 174 bits (192), Expect = 2e-38 Identities = 138/166 (83%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 146982 CTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAA 147041 ||| ||||| || | ||| || | ||||||||||||||| | ||||||||| |||||||| Sbjct 41189317 CTTCAGGCCCGTGATGTGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCAATGTTGAA 41189258 Query 147042 GGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTC 147101 ||| || |||||||||||||| ||||| ||||||||||||||||| || ||||| |||| Sbjct 41189257 GGGCACACCCAGGCCCATGTCTCCCGATCTCTGGTACAGCTGGCAGGACAGCTCACCGTT 41189198 Query 147102 GGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCATG 147147 ||||||| |||||||| ||| ||||| || ||||| |||||| Sbjct 41189197 CACCACGTAGAACTGGCAGAGGGCATGGCAGGGAGGCAGAGCCATG 41189152 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583417711576800