Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Equus_20caballus_20[refseq_20GCF_5F000002305.2_202007-10-29] 9,637 sequences; 2,474,929,062 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq15 109 4e-19 seq9 89.7 4e-13 seq11 82.4 6e-11 >seq15 Length=91571448 Score = 109 bits (120), Expect = 4e-19 Identities = 91/109 (83%), Gaps = 2/109 (2%) Strand=Plus/Minus Query 43913 CAAGAAGTTCA-ATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAA 43971 ||||||||||| ||||| |||||| || ||||| ||||| || ||||| ||||| ||||| Sbjct 83359938 CAAGAAGTTCAGATTAC-AGAAGCCCGCTGTTTCTATGGCTTCCAAATCGCCATGGAAAA 83359880 Query 43972 TATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 || ||||| |||||||||||||| || || || || ||||| |||||| Sbjct 83359879 CATACATTCTGAAATGTACAGTCTCCTCATTGACACTTACATTAAAGAT 83359831 Score = 95.1 bits (104), Expect = 1e-14 Identities = 109/146 (75%), Gaps = 2/146 (1%) Strand=Plus/Minus Query 44113 TGATTCTT--TTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCA 44170 ||| |||| | |||||||| |||| || ||||| | |||||||| || || ||||| Sbjct 83357821 TGACTCTTAATAGGAGAACGGGTTGTAGCCTTTGCCGCAGTGGAAGGAATCTTTTTTTCT 83357762 Query 44171 GGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTT 44230 || || ||||| ||||||| ||| | ||||||||||| ||||||| || | || ||| Sbjct 83357761 GGCTCTTTTGCATCCATATTCTGGCTCAAGAAACGAGGACTGATGCCCGGCCTCACATTT 83357702 Query 44231 TCAAATGAGTTAATAAGTCGTGATGA 44256 || ||||| | || || | ||||| Sbjct 83357701 TCCAATGAACTTATTAGCAGAGATGA 83357676 >seq9 Length=83561422 Score = 89.7 bits (98), Expect = 4e-13 Identities = 69/82 (84%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 44493 AAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAA 44552 |||| || ||||||||||||||||| ||||| || ||||| |||||||| || ||||| | Sbjct 47778800 AAAATCCCTTTGATTTTATGGAAAACATTTCTTTAGAAGGGAAAACAAATTTCTTTGAGA 47778741 Query 44553 AACGCGTTGGAGAATATCAGCG 44574 |||| ||| ||| |||||||| Sbjct 47778740 AACGAGTTTCAGAGTATCAGCG 47778719 >seq11 Length=61308211 Score = 82.4 bits (90), Expect = 6e-11 Identities = 115/162 (71%), Gaps = 6/162 (4%) Strand=Plus/Plus Query 19540 AAAAGTTCTTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGT 19599 || ||| ||||||||| || || | |||||| | || || ||||| ||||| ||||| Sbjct 17995478 AACAGTGGTTTGCACATCATCATCTTTGATGAAATTGATGCCATCTGCAAGCAGAGAGGG 17995537 Query 19600 T------CTGGTGTAAATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTA 19653 ||||| | ||||| ||||||||||| ||||| || | ||||| ||| | Sbjct 17995538 AGCATGGCTGGTAGCACAGGAGTTCATGACACTGTCGTCAACCAGTTACTGTCCAAAATT 17995597 Query 19654 GACGGTGTTAACCAACTGAATAATATTTTAGTTATTGGCATG 19695 || || || | || ||||| || || ||||| ||||| ||| Sbjct 17995598 GATGGGGTAGAGCAGCTGAACAACATCTTAGTCATTGGTATG 17995639 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397409318420185