Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Equus_20caballus_20[refseq_20GCF_5F000002305.2_202007-10-29] 9,637 sequences; 2,474,929,062 total letters Query= NC_027984.1 Length=57677 Score E Sequences producing significant alignments: (Bits) Value seq1 82.4 3e-11 >seq1 Length=185838109 Score = 82.4 bits (90), Expect = 3e-11 Identities = 163/232 (70%), Gaps = 7/232 (3%) Strand=Plus/Minus Query 22215 CTGAATC-GCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATAT-TTGCCCATGGTG 22272 ||||||| ||| | ||| || ||| || | |||| ||| | ||| ||||||| | Sbjct 69164956 CTGAATCTGCCCGGGGCCTCCGCAGCTCGGCGCCGTGCCGTTTCTATCTTGCCCACACGG 69164897 Query 22273 AAAACGGGGGCGAAGAA-GTTGTCCATATTGGCCACGTTTAAATCAAAACTGG-TGAAAC 22330 | || | |||| || |||| | | ||||||||||| || ||||||| | ||| Sbjct 69164896 ATAAAGCAAGCGATTAAAGTTGGGCGTCATGGCCACGTTTTGATAGAAACTGGCGGGAAC 69164837 Query 22331 TCACCCAGGGATTGGCTGAGACGAAAA-ACATATTCTCAATAAACCCTTTAGGGAAATAG 22389 ||| ||||||| || || | |||||| ||| |||| |||||| | ||||||| Sbjct 69164836 TCAGCCAGGGAGTGAGTGGGCCGAAAAGACAAGATCTCCTCAAACCCCTCTAAGAAATAG 69164777 Query 22390 GCCAGGTTTTCACCGTAACACGCCA-CAT-CTTGCGAATATATGTGTAGAAA 22439 | | ||||||| ||||| ||||||| ||| || | | ||||| ||| |||| Sbjct 69164776 GGCGGGTTTTCTCCGTACCACGCCACCATCCTGGGGGATATAGGTGGTGAAA 69164725 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 184423692252366