Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Equus_20caballus_20[refseq_20GCF_5F000002305.2_202007-10-29] 9,637 sequences; 2,474,929,062 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq9 154 2e-32 seq11 152 6e-32 seq8 150 2e-31 seq3 134 2e-26 seq4 105 8e-18 seq24 102 9e-17 seq21 93.3 5e-14 seq23 87.8 2e-12 seq16 82.4 9e-11 >seq9 Length=83561422 Score = 154 bits (170), Expect = 2e-32 Identities = 156/203 (77%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| || || |||||||| || || |||||||||||||| || Sbjct 63528142 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTTGAGTCCAGT 63528201 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| | || |||||||| || ||||| ||||| || || || |||||| Sbjct 63528202 GACACCATTGAGAATGTTAAAGCTAAAATCCAAGACAAAGAGGGCATCCCACCTGACCAG 63528261 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || |||| |||||||| || || || || || |||| || || || ||||||| ||| Sbjct 63528262 CAATGTCTGATTTTTGCCGGCAAACAGCTGGAAGATGGCCGCACTCTCTCAGACTACAAT 63528321 Query 27586 GTCCAAAAGGAATCCACTCTTCA 27608 |||| | || ||||| || || Sbjct 63528322 ATCCAGAGAGACTCCACCCTGCA 63528344 >seq11 Length=61308211 Score = 152 bits (168), Expect = 6e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || || ||||| || ||||||||||| || || || ||||| ||| | | Sbjct 57863688 ATGCAGATTTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGC 57863629 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || ||||||| || || ||||| |||||||| || || || |||||| Sbjct 57863628 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAGGGCATCCCCCCCGACCAG 57863569 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || ||||| || ||||| || ||||||| || ||||| | ||||| || Sbjct 57863568 CAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAGGATGGGCGCACCCTGTCTGACTACAAC 57863509 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| |||||||| || || || ||||||| | ||||| Sbjct 57863508 ATCCAGAAGGAGTCCACTCTGCACCTGGTTCTGCGTCTCAGAGGTGG 57863462 Score = 134 bits (148), Expect = 2e-26 Identities = 161/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| |||||||| ||||| || ||||||||||| || || || ||||| ||| | | Sbjct 57863917 AATGCAGATCTTTGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAG 57863858 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | ||| | || ||||||| || || ||||| |||||||| || || || ||||| Sbjct 57863857 CGACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAGGGCATCCCCCCCGACCA 57863798 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||| | || || ||||| || ||||| || || |||| || || || | || || || Sbjct 57863797 GCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCCGATTACAA 57863738 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623 |||| || || || || || || || || ||||||| Sbjct 57863737 CATCCAGAAAGAGTCGACCCTGCACCTGGTGCTGCGTCT 57863699 Score = 125 bits (138), Expect = 8e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || || ||||| || ||||||||||| || || || ||||| ||| | | Sbjct 57863460 ATGCAGATTTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGC 57863401 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| ||||||| || || ||||| |||||||| || || || |||||| Sbjct 57863400 GACACCATCGAGAATGTGAAGGCCAAGATCCAGGATAAGGAGGGCATCCCCCCCGACCAG 57863341 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || ||||| || ||||| || || |||| || || || | || || || Sbjct 57863340 CAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAAC 57863281 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| || || || || || || || || | ||||| | ||||| Sbjct 57863280 ATCCAGAAAGAGTCGACCCTGCACCTGGTGCTCCGTCTCAGGGGTGG 57863234 >seq8 Length=94057673 Score = 150 bits (166), Expect = 2e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| ||||| || ||||| || || || ||||| || || || ||||| ||| | | Sbjct 24468545 AATGCAGATCTTCGTGAAGACCCTGACGGGGAAGACCATCACCCTGGAGGTGGAGCCCAG 24468486 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | ||| | || | ||||| || || |||||||||||||| || || || ||||| Sbjct 24468485 CGACACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCA 24468426 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||| | || || || || || ||||| || ||||||| || ||||| | ||||| || Sbjct 24468425 GCAGAGGCTCATCTTCGCCGGGAAGCAGCTGGAGGATGGGCGCACCCTGTCTGACTACAA 24468366 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| |||||||| || || ||| ||||||| | ||||| Sbjct 24468365 CATCCAGAAGGAGTCCACTCTGCACCTGGTCCTGCGTCTCAGAGGTGG 24468318 Score = 149 bits (164), Expect = 7e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || || ||||| || ||||| ||||| || || || ||||| ||| | | Sbjct 24468088 ATGCAGATTTTCGTGAAGACCCTGACCGGGAAGACGATCACCCTGGAGGTGGAGCCCAGC 24468029 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || | ||||| || || |||||||||||||| || || || |||||| Sbjct 24468028 GACACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAG 24467969 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || || || || ||||| || ||||||| || ||||| | ||||| || Sbjct 24467968 CAGAGGCTCATCTTCGCCGGGAAGCAGCTGGAGGATGGGCGCACCCTGTCTGACTACAAC 24467909 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| |||||||| || || ||| ||||||| | ||||| Sbjct 24467908 ATCCAGAAGGAGTCCACTCTGCACCTGGTCCTGCGTCTCAGAGGTGG 24467862 Score = 143 bits (158), Expect = 3e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || || ||||| || || || ||||| || || || ||||| ||| | | Sbjct 24468316 ATGCAGATTTTCGTGAAGACCCTGACGGGGAAGACCATCACCCTGGAGGTGGAGCCCAGC 24468257 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || | ||||| || || |||||||||||||| || || || |||||| Sbjct 24468256 GACACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAG 24468197 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || || || || ||||| || ||||||| || ||||| | ||||| || Sbjct 24468196 CAGAGGCTCATCTTCGCCGGGAAGCAGCTGGAGGATGGGCGCACCCTGTCTGACTACAAC 24468137 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| |||||||| || || ||| ||||||| | ||||| Sbjct 24468136 ATCCAGAAGGAGTCCACTCTGCACCTGGTCCTGCGTCTCAGAGGTGG 24468090 Score = 131 bits (144), Expect = 2e-25 Identities = 158/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || || ||||| || || || ||||| || || || ||||| ||| | | Sbjct 24467632 ATGCAGATTTTCGTGAAGACCCTGACGGGGAAGACCATCACCCTGGAGGTGGAGCCCAGC 24467573 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || | ||||| || || |||||||||||||| || || || |||||| Sbjct 24467572 GACACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAG 24467513 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || || || || ||||| || ||||||| || ||||| | ||||| || Sbjct 24467512 CAGAGGCTCATCTTCGCCGGGAAGCAGCTGGAGGATGGGCGCACCCTGTCTGACTACAAC 24467453 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCG 27620 |||| || ||||| ||||| || || ||| |||| Sbjct 24467452 ATCCAGAAAGAATCTACTCTGCACCTGGTCCTGCG 24467418 >seq3 Length=119479920 Score = 134 bits (148), Expect = 2e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || || || || ||||| || ||||| || ||||| |||||||| | Sbjct 109160685 ATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACTCTCGAGGTTGAACCCTAG 109160626 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| || | |||| | ||||| || || ||||| | ||| ||||||||||| || ||| Sbjct 109160625 GATACAATAGAAAATATAAAGGCCAAGATCCAGGATACGGAAGGAATTCCTCCTGATCAG 109160566 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || | || || |||||||| |||||| | | |||| | | | | | ||||| || Sbjct 109160565 CAAAGACTGATCTTTGCTGGCAAGCAAATGAAAGATGGACATGCTTTGTCTGACTACAAC 109160506 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||||||||||||||||||||||| || ||| | ||| | ||||| Sbjct 109160505 AATCAAAAGGAATCCACTCTTCATCTTGTGTTGAGACTTTGTGGTGG 109160459 >seq4 Length=108569075 Score = 105 bits (116), Expect = 8e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| |||| || | || ||||| || |||||||| || || | || Sbjct 2126495 ATGCAGATCTTTGTGGAGACCCTGATGGGGAAGACCATCACTCTTGAAGTCCAGCCCAGT 2126554 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || || ||| | || ||||||| || ||||||||||| || | || |||||| Sbjct 2126555 GACACCACTGAGAATGTCAAAGCTAAAACCCAAGACAAGGAGGGCATCCTGCCCGACCAG 2126614 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| |||| |||||| || || || || ||||||| | || || |||| || ||| Sbjct 2126615 CAGTGTCTGGTTTTTGTGGGCAAACAGCTAGAGGATGGCCTCACTCTTACAGAGTACAAT 2126674 Query 27586 GTCCAAAAGGA 27596 |||| || || Sbjct 2126675 ATCCAGAAAGA 2126685 >seq24 Length=46749900 Score = 102 bits (112), Expect = 9e-17 Identities = 133/182 (73%), Gaps = 4/182 (2%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| || || |||||||| || || | ||||| ||| | || Sbjct 44055684 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCTTCGAGGTCGAGGCCAGT 44055625 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || || ||| | || |||||||| || ||||| ||||| || || |||||| Sbjct 44055624 GACACCACTGAGAATGTTAAAGCTAAAATCCAAGACAACGAGGGCATCTTGCCTGACCAG 44055565 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGA--TCGTACCCTAGCAGACTATA 27583 |||||||| ||| ||| || | | || |||||||| || |||| ||||||| | Sbjct 44055564 CAGCGTCTGGTTTGTGCGGGCAGATAGCTGGAGGATGACGGCGCTCCCT--CAGACTACA 44055507 Query 27584 AT 27585 || Sbjct 44055506 AT 44055505 >seq21 Length=57723302 Score = 93.3 bits (102), Expect = 5e-14 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| || || |||||||| || || || ||||||||| | || Sbjct 3198549 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTTGAGCCCAGT 3198608 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGG 27509 || | ||||| ||| | || |||||||| || ||||||||||| Sbjct 3198609 GACACCATTGAGAATGTTAAAGCTAAAATCCAAGACAAGGAGGG 3198652 >seq23 Length=55726280 Score = 87.8 bits (96), Expect = 2e-12 Identities = 142/199 (71%), Gaps = 8/199 (4%) Strand=Plus/Minus Query 27436 AAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATT-GCAAATTTGAAGGCTAAAAT 27494 |||| || ||||| ||||| | || |||| |||| | |||| | ||||| || || Sbjct 23152903 AAGAACATCACTCTCAAGGTTAAATCCTCAGATA-CATTAGAAAATGTAAAGGCCAAGAT 23152845 Query 27495 TCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACT 27554 |||||||||| ||||||||||| || |||| | || |||||||| || |||||||| Sbjct 23152844 CCAGGACAAGGCAGGAATTCCTCCTGATCAGCTAAGACTCATTTTTGCCGGCAAGCAACT 23152785 Query 27555 CGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTC-TTCATCTAG 27613 || |||| | || | ||||| || | ||||||||| ||| | ||||||| | Sbjct 23152784 GGAAGATGGACTTAGTGT----GACTACAA-CTTCAAAAGGAACCCAAACTTTCATCTTG 23152730 Query 27614 TCTTGCGTCTTCGCGGTGG 27632 | || | |||| ||||| Sbjct 23152729 TGTTAAGACTTCATGGTGG 23152711 >seq16 Length=87365405 Score = 82.4 bits (90), Expect = 9e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 32125 ACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGAGCCA 32184 || ||||| || | |||||||||||||| || || ||| | ||||| || |||| Sbjct 57428188 ACTATTGTGAATTTGGCTCAGAACTTTGTGGGAAGTAACAACATTAACTTGCTTCAGCCT 57428247 Query 32185 TCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCCGTTACATC 32244 ||| |||||||| || ||||| |||||||| |||||||| ||| | ||||| || Sbjct 57428248 ATTGGTCAGTTTGGAACTCGGCTTCATGGTGGCAAAGATGCTGCAAGCCCTCGTTATATT 57428307 Query 32245 TTCAC 32249 ||||| Sbjct 57428308 TTCAC 57428312 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570241698983440