Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Equus_20caballus_20[refseq_20GCF_5F000002305.2_202007-10-29] 9,637 sequences; 2,474,929,062 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq11 113 4e-20 seq9 105 6e-18 >seq11 Length=61308211 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || |||||||||||| | || || || || ||||| || | Sbjct 57863916 ATGCAGATCTTTGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGC 57863857 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| || || || || || || || || ||||| || ||||| || Sbjct 57863856 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAGGGCATCCCCCCCGACCAG 57863797 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | || ||||| || ||||||| | || |||||||||||||| Sbjct 57863796 CAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCCGATTACAAC 57863737 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || || ||||||||| | || |||| ||||| || | || || || Sbjct 57863736 ATCCAGAAAGAGTCGACCCTGCACCTGGTGCTGCGTCTGAGAGGCGGTAT 57863687 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || |||||||||||| | || || || || ||||| || | Sbjct 57863460 ATGCAGATTTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGC 57863401 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| || || || || || || || || ||||| || ||||| || Sbjct 57863400 GACACCATCGAGAATGTGAAGGCCAAGATCCAGGATAAGGAGGGCATCCCCCCCGACCAG 57863341 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | || ||||| || ||||||| | || |||| ||||||||| Sbjct 57863340 CAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAAC 57863281 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 || || || ||||||||| | || |||| | ||| | |||||||| Sbjct 57863280 ATCCAGAAAGAGTCGACCCTGCACCTGGTGCTCCGTCTCAGGGGTGGC 57863233 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || |||||||||||| | || || || || ||||| || | Sbjct 57863688 ATGCAGATTTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGC 57863629 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| || || || || || || || || ||||| || ||||| || Sbjct 57863628 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAGGGCATCCCCCCCGACCAG 57863569 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | || ||||| || |||| || | ||| | || || |||||| Sbjct 57863568 CAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAGGATGGGCGCACCCTGTCTGACTACAAC 57863509 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||| || | || ||||| ||||| | | ||||| || Sbjct 57863508 ATCCAGAAGGAGTCCACTCTGCACCTGGTTCTGCGTCTCAGAGGTGGGAT 57863459 >seq9 Length=83561422 Score = 105 bits (116), Expect = 6e-18 Identities = 152/213 (71%), Gaps = 6/213 (3%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| ||||| || || ||||| |||||| | || || ||||| || || ||| Sbjct 63528141 CATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTTGA---GTC 63528197 Query 27047 C---GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGA 27103 | ||| | ||||||| || ||| ||||| ||||||||||| ||||| ||||| || Sbjct 63528198 CAGTGACACCATTGAGAATGTTAAAGCTAAAATCCAAGACAAAGAGGGCATCCCACCTGA 63528257 Query 27104 TCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTA 27163 || || || | || | ||||||||||| ||||||| | || | || || || Sbjct 63528258 CCAGCAATGTCTGATTTTTGCCGGCAAACAGCTGGAAGATGGCCGCACTCTCTCAGACTA 63528317 Query 27164 CAACATTCAAAAGGAGTCGACCTTACATTTGGT 27196 ||| || || | || || ||| | || ||||| Sbjct 63528318 CAATATCCAGAGAGACTCCACCCTGCACTTGGT 63528350 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434866008642240