Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Equus_20caballus_20[refseq_20GCF_5F000002305.2_202007-10-29] 9,637 sequences; 2,474,929,062 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq19 187 2e-42 seq2 147 2e-30 seq8 122 7e-23 >seq19 Length=59975221 Score = 187 bits (206), Expect = 2e-42 Identities = 195/256 (76%), Gaps = 0/256 (0%) Strand=Plus/Minus Query 1270 aaaCGCCACAAGAAGTTGTCATTGTAACATGGCAAAAAGTTAAAGCATCAAGCCCAGAAA 1329 |||| | || ||||| | ||||| |||||||| ||| | || | | | |||||||| Sbjct 45341863 AAACTTCCCAGGAAGTCTTGATTGTGACATGGCAGAAAATCAAGCCTACGATCCCAGAAA 45341804 Query 1330 ACATGGCCACTTTTAGTAATGACCACGGGGTTGTTGTTCAGCCAGCATACAAAGATAAAA 1389 ||||| ||| || || || |||||||||||||| || ||||| || || ||||| || | Sbjct 45341803 ACATGATCACCTTCAGCAAGGACCACGGGGTTGTGGTCCAGCCTGCTTATAAAGACAAGA 45341744 Query 1390 TGAACATAACTGAGCTTGGACTACAAAACACAACTATAACCTTCTGGAACACAACATTGG 1449 | ||||| ||| |||| ||||| || ||| |||| || ||||||||||| || || ||| Sbjct 45341743 TAAACATCACTCAGCTAGGACTCCAGAACTCAACCATTACCTTCTGGAATACCACCCTGG 45341684 Query 1450 ATGATGAAGGGTGCTACAAGTGTTTATTTAACACTTTTGGATCTGGGAAGATGTCAGGAA 1509 | ||||| ||||| ||||| || | || || || ||||| || |||||||| |||||| Sbjct 45341683 AGGATGAGGGGTGTTACAATTGCCTCTTCAATACCTTTGGTTCCGGGAAGATCTCAGGAG 45341624 Query 1510 TAGGGTGTCTAACCCT 1525 ||| || || ||||| Sbjct 45341623 TAGCCTGCCTTACCCT 45341608 >seq2 Length=120857687 Score = 147 bits (162), Expect = 2e-30 Identities = 290/423 (69%), Gaps = 12/423 (3%) Strand=Plus/Minus Query 2263 AAACAGAATGTTGTAATTATGGGAAGAAAGACATGGTTTTCACTTCCCATTAAAAGCA-- 2320 ||||||||| | || |||||||| || ||||| ||| || |||| | ||||| Sbjct 33213046 AAACAGAATTTGGTGATTATGGGTAGGAAGACCCCGTTCTCCATTCC--TGAAAAGATTC 33212989 Query 2321 GGCCTTTGAACAACAGAATAAATCTGGTTCTCAGTAGACACCTTAAAGAGCCACCACGTG 2380 | ||||| || |||||| ||| | |||||||||||| | || || | | |||| | Sbjct 33212988 GACCTTTAAAGGACAGAAATAATTTAGTTCTCAGTAGAGAACTCAAGTAACGTCCACAAG 33212929 Query 2381 GGGCTCACTTTGTTGCAAAAAGTATAGATCACGCTCTGGAAATTATAATAGGACCAGAAT 2440 | ||||| ||| || | |||||| | ||| | || || | ||| | |||||||| Sbjct 33212928 GAGCTCATTTTCTTCCCAAAAGTTTGGATGATGCCCTAACACTTACTGCACAACCAGAAT 33212869 Query 2441 TAAAAGACAGGGTGGATAAGATTTGGATAATTGGTGGAAGATCTGTCTATGAGGAGAGCA 2500 ||| | | | |||| | | |||||||| | || || || ||||| ||| |||| |||| Sbjct 33212868 TAACAAATAAAATGGACATGGTTTGGATAGTGGGAGGCAGTTCTGTTTATAAGGA-AGCA 33212810 Query 2501 --TTACAAGATCTTGCAAACAGATGCTGTTTTTAACAAGGATTCTGCAAAAATTTGAATG 2558 ||||| | || | | | || ||| | ||||| || |||| |||||||| | Sbjct 33212809 AGGAACAAG-CCAGGCCATCTTAGACTATTTGTGACAAGTATCATGCAGGAATTTGAAAG 33212751 Query 2559 TGATACATACTTCCCAGAAATTAATCTTACCAAATACAAACAACTTACTGAATTTCCAGG 2618 ||| |||| || ||||||| | || | | | |||| || | |||| |||||| Sbjct 33212750 TGACACATTTTTTCCAGAAACTGATTT----GGAGAAAAACTTCTCCCAGAATATCCAGG 33212695 Query 2619 TGTTCCCTCTGCCGTGCAAGAAGAAAATGGAATTAGATACAAATTTGAGATATATGaaaa 2678 ||||| |||| || || || || || || ||| ||||||||||| |||||||||| Sbjct 33212694 TGTTCTTTCTGATGTCCAGGAGGAGAAAGGCCTTAAGTACAAATTTGAAGTATATGAAAA 33212635 Query 2679 aaa 2681 || Sbjct 33212634 GAA 33212632 >seq8 Length=94057673 Score = 122 bits (134), Expect = 7e-23 Identities = 111/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 3245 GTTGTTGATGAGCTCTTCCGAGATGGGGTAAACTGGGGGCGCATTGTTGCTTTCTTTGAG 3304 || || || ||||||||| | |||||||| ||||||||| | ||||| || ||||||||| Sbjct 79618428 GTAGTGGAGGAGCTCTTCAGGGATGGGGTGAACTGGGGGAGGATTGTGGCCTTCTTTGAG 79618369 Query 3305 TTTGGTGGTGTTATGTGTGTGGAAAGCGTCAATAGAGGCATACCCTCCCTCGTTGACAAC 3364 || ||||| || ||||||||||| |||||||| | | || | |||| || |||||| Sbjct 79618368 TTCGGTGGGGTCATGTGTGTGGAGAGCGTCAACCGGGAGATGTCGCCCCTGGTGGACAAC 79618309 Query 3365 ATTGCCGCGTGGATGACAGA 3384 || ||| ||||||||| || Sbjct 79618308 ATCGCCCTGTGGATGACTGA 79618289 Score = 104 bits (114), Expect = 2e-17 Identities = 120/162 (74%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 118534 AGCCCTGTCAGGTGAGCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGA 118593 || || || | ||| || |||||||| || | || ||||||||| | || || || Sbjct 41189313 AGGCCCGTGATGTGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCAATGTTGAAGGGC 41189254 Query 118594 ACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTGCA 118653 |||||||| ||||||||| | ||||||||||||| ||||| || ||||| ||||| | Sbjct 41189253 ACACCCAGGCCCATGTCTCCCGATCTCTGGTACAGCTGGCAGGACAGCTCACCGTTCACC 41189194 Query 118654 ACATAAAACTGACTTATGATGTGACATGGAGGCAGAACCATG 118695 || || ||||| | | | || || ||||||||| ||||| Sbjct 41189193 ACGTAGAACTGGCAGAGGGCATGGCAGGGAGGCAGAGCCATG 41189152 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414428119311268