Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Equus_20caballus_20[refseq_20GCF_5F000002305.2_202007-10-29] 9,637 sequences; 2,474,929,062 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq11 172 1e-37 seq8 163 7e-35 seq3 152 1e-31 seq9 134 3e-26 seq23 107 4e-18 seq18 102 2e-16 seq14 93.3 1e-13 seq21 84.2 5e-11 seq4 84.2 5e-11 >seq11 Length=61308211 Score = 172 bits (190), Expect = 1e-37 Identities = 167/215 (78%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || || |||||||| |||||||| ||||| | ||| || | |||||| Sbjct 57863705 AGCACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCGGAAAGAGTGCGGCCATCT 57863764 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||||||||| ||||| || | || ||||| || || | || ||||| ||| Sbjct 57863765 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGGATGCCCTCCTTATCC 57863824 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| |||||||| ||||||||||| | || ||||| || ||||| ||| Sbjct 57863825 TGGATCTTGGCCTTCACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTC 57863884 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || || || || ||||| ||||| | ||||||||| Sbjct 57863885 TTGCCGGTCAGGGTCTTCACAAAGATCTGCATTTT 57863919 Score = 158 bits (174), Expect = 3e-33 Identities = 162/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || || |||||||| |||||||| ||||| | ||| || | |||||| Sbjct 57863249 AGCACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCT 57863308 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||||||||| ||||| || | || ||||| || || | || ||||| ||| Sbjct 57863309 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGGATGCCCTCCTTATCC 57863368 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| ||||| || ||||||||||| | || ||||| || ||||| ||| Sbjct 57863369 TGGATCTTGGCCTTCACATTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTC 57863428 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || ||||| || || | |||||| Sbjct 57863429 TTGCCGGTCAGGGTCTTCACGAAAATCTGCAT 57863460 Score = 158 bits (174), Expect = 3e-33 Identities = 162/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| ||||||||||| || |||||||| || || | ||||| | ||||| Sbjct 57863477 AGAACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCC 57863536 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||||||||| ||||| || | || ||||| || || | || ||||| ||| Sbjct 57863537 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGGATGCCCTCCTTATCC 57863596 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| |||||||| ||||||||||| | || ||||| || ||||| ||| Sbjct 57863597 TGGATCTTGGCCTTCACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTC 57863656 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || ||||| || || | |||||| Sbjct 57863657 TTGCCGGTCAGGGTCTTCACGAAAATCTGCAT 57863688 >seq8 Length=94057673 Score = 163 bits (180), Expect = 7e-35 Identities = 164/213 (77%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||| ||||||||||| || |||||||| || || | ||||| | ||||| Sbjct 24468333 AGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCC 24468392 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||| || |||||||| || | || ||||| || || | || ||||||||| Sbjct 24468393 TCCAGCTGCTTCCCGGCGAAGATGAGCCTCTGCTGGTCGGGGGGGATGCCCTCCTTGTCC 24468452 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || ||||| ||||||||||| | || ||||| || ||||| ||| Sbjct 24468453 TGGATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTC 24468512 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 || ||||| || ||||| || || | ||||||| Sbjct 24468513 TTCCCCGTCAGGGTCTTCACGAAGATCTGCATT 24468545 Score = 161 bits (178), Expect = 2e-34 Identities = 163/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||| ||||||||||| || |||||||| || || | ||||| | ||||| Sbjct 24467877 AGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCC 24467936 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||| || |||||||| || | || ||||| || || | || ||||||||| Sbjct 24467937 TCCAGCTGCTTCCCGGCGAAGATGAGCCTCTGCTGGTCGGGGGGGATGCCCTCCTTGTCC 24467996 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || ||||| ||||||||||| | || ||||| || ||||||||| Sbjct 24467997 TGGATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATCGTC 24468056 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || ||||| || || | |||||| Sbjct 24468057 TTCCCGGTCAGGGTCTTCACGAAAATCTGCAT 24468088 Score = 161 bits (178), Expect = 2e-34 Identities = 163/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||| ||||||||||| || |||||||| || || | ||||| | ||||| Sbjct 24468105 AGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCC 24468164 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||| || |||||||| || | || ||||| || || | || ||||||||| Sbjct 24468165 TCCAGCTGCTTCCCGGCGAAGATGAGCCTCTGCTGGTCGGGGGGGATGCCCTCCTTGTCC 24468224 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || ||||| ||||||||||| | || ||||| || ||||| ||| Sbjct 24468225 TGGATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTC 24468284 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| || ||||| || || | |||||| Sbjct 24468285 TTCCCCGTCAGGGTCTTCACGAAAATCTGCAT 24468316 Score = 158 bits (174), Expect = 3e-33 Identities = 162/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||| ||||| || ||||| |||||||| || || | ||||| | ||||| Sbjct 24467421 AGGACCAGGTGCAGAGTAGATTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCC 24467480 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||| || |||||||| || | || ||||| || || | || ||||||||| Sbjct 24467481 TCCAGCTGCTTCCCGGCGAAGATGAGCCTCTGCTGGTCGGGGGGGATGCCCTCCTTGTCC 24467540 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || ||||| ||||||||||| | || ||||| || ||||| ||| Sbjct 24467541 TGGATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTC 24467600 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| || ||||| || || | |||||| Sbjct 24467601 TTCCCCGTCAGGGTCTTCACGAAAATCTGCAT 24467632 Score = 158 bits (174), Expect = 3e-33 Identities = 162/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||| ||||||||||| || |||||||| || || | ||||| | ||||| Sbjct 24467649 AGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCC 24467708 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||| || |||||||| || | || ||||| || || | || ||||| ||| Sbjct 24467709 TCCAGCTGCTTCCCGGCGAAGATGAGCCTCTGCTGGTCGGGGGGGATGCCCTCCTTATCC 24467768 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || ||||| ||||||||||| | || ||||| || ||||| ||| Sbjct 24467769 TGGATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTC 24467828 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| || ||||| || || | |||||| Sbjct 24467829 TTCCCCGTCAGGGTCTTCACGAAAATCTGCAT 24467860 >seq3 Length=119479920 Score = 152 bits (168), Expect = 1e-31 Identities = 172/227 (76%), Gaps = 4/227 (2%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCG-CAAGGG 210951 || |||||| | ||||| ||||||||||| || ||||| |||| || || | ||| | Sbjct 109160464 ACAAAGTCTCAACACAAGATGAAGAGTGGATTCCTTTTGATTGTTGTAGTCAGACAAAG- 109160522 Query 210952 TCCT-TCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACT 211010 | | |||||||| || |||||||| || ||||| || | ||| || |||||||||| | Sbjct 109160523 -CATGTCCATCTTTCATTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATT 109160581 Query 211011 CCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCG 211070 |||||| | ||||||||||| || | ||||| || || || || |||||||||| Sbjct 109160582 CCTTCCGTATCCTGGATCTTGGCCTTTATATTTTCTATTGTATCCTAGGGTTCAACCTCG 109160641 Query 211071 AGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 |||||||| ||||| ||||| || || || || || | |||||| || Sbjct 109160642 AGAGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATCTT 109160688 >seq9 Length=83561422 Score = 134 bits (148), Expect = 3e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||| || ||||| ||| | ||||| || || || | || || | |||||| Sbjct 63528353 AGCACCAAGTGCAGGGTGGAGTCTCTCTGGATATTGTAGTCTGAGAGAGTGCGGCCATCT 63528294 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||| ||||| || || || || | ||| |||||||| || | || || ||||| Sbjct 63528293 TCCAGCTGTTTGCCGGCAAAAATCAGACATTGCTGGTCAGGTGGGATGCCCTCTTTGTCT 63528234 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 ||||| || ||| || || || ||||||||| | |||||||| || ||||| ||| Sbjct 63528233 TGGATTTTAGCTTTAACATTCTCAATGGTGTCACTGGACTCAACCTCAAGGGTGATGGTC 63528174 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| || ||||| ||||| | |||||| Sbjct 63528173 TTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 63528142 >seq23 Length=55726280 Score = 107 bits (118), Expect = 4e-18 Identities = 145/197 (74%), Gaps = 9/197 (5%) Strand=Plus/Plus Query 210895 GAAGTCTTAGGACAAGGTGAA-GAGTGGACTCTTTTTGGATGTTATAATC-CGCAAGGGT 210952 ||||||||| ||||| |||| | ||| || ||||| | ||| || || | | | | Sbjct 23152718 GAAGTCTTAACACAAGATGAAAGTTTGGGTTCCTTTTGAA-GTTGTAGTCACACTAAG-- 23152774 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 |||||||||||| |||||||| || || || || | | | || |||||||||| ||| Sbjct 23152775 ---TCCATCTTCCAGTTGCTTGCCGGCAAAAATGAGTCTTAGCTGATCAGGAGGAATTCC 23152831 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 | |||||||||||||||| || || ||||| | || || ||| || ||||| ||| Sbjct 23152832 TGCCTTGTCCTGGATCTTGGCCTTTACATTTTCTAATGTATCTGAGGATTTAACCTTGAG 23152891 Query 211073 AGTGATCGTCTT-TCCC 211088 |||||| |||| |||| Sbjct 23152892 AGTGATGTTCTTCTCCC 23152908 >seq18 Length=82527541 Score = 102 bits (112), Expect = 2e-16 Identities = 155/216 (72%), Gaps = 5/216 (2%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||| || || |||| || | | ||| || || | ||| || ||| || Sbjct 42657046 AGGACCAGGTGCAGGGTTGACT--TTCTCAAGGTTGTAGTCAGAAAGAGTGAGGCCACCT 42656989 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGG-TCAGGAGGAACTCCTTCCTTGTC 211021 ||||| ||||||||||| ||||| || ||| ||| | ||||||| |||| | || Sbjct 42656988 TCCAGTTGCTTGCCTGCAAAGATGAGCATTTGCTGGCTAAGGAGGATG-CCTTTTTCATC 42656930 Query 211022 CTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGT 211081 ||||||||| ||||| || || ||||| ||| | ||| ||||| || ||||| | Sbjct 42656929 CTGGATCTTGGCCTTCACATTCTCCATGGTATCACTG-GTTCCACCTCTAGGGTGATGAT 42656871 Query 211082 CTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 ||||| || |||||| | ||||| | |||||||| Sbjct 42656870 CTTTCAGGTCAGAGTCCTCACAAAGATTTGCATTTT 42656835 >seq14 Length=93904894 Score = 93.3 bits (102), Expect = 1e-13 Identities = 145/203 (71%), Gaps = 6/203 (3%) Strand=Plus/Plus Query 210915 AGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCAT-CTTCCAGCTGCTT 210973 || ||||||||||| |||||||| | || | || || |||| ||||| || || Sbjct 49433602 AGGGTGGACTCTTTCTGGATGTTGTTGTCTGAGAGAGTTTGACCATGCTTCC-TCTCTTT 49433660 Query 210974 GCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTG 211033 |||||| || || || | || |||||||| | | ||||||||||| ||||| || Sbjct 49433661 GCCTGCAAACATCAGATGCTGCTGGTCAGGTGAGATGCCTTCCTTGTCTTGGATTTTGGT 49433720 Query 211034 TTTCACGTTTTCGATGGTGTCA--GAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091 ||| || || | |||||||||| | |||| |||| ||| || || ||||| || | Sbjct 49433721 TTTGACATTCTTGATGGTGTCACTGGGCTT--GACCTTGAGGGTAATGGTCTTGCCTGCA 49433778 Query 211092 AGAGTCTTTACAAACACCTGCAT 211114 || ||||| ||||| |||||| Sbjct 49433779 AGGGTCTTCACAAAGCTCTGCAT 49433801 >seq21 Length=57723302 Score = 84.2 bits (92), Expect = 5e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 211011 CCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCG 211070 || |||||||| ||||| || ||| || || || ||||||||| | ||||||||| Sbjct 3198652 CCCTCCTTGTCTTGGATTTTAGCTTTAACATTCTCAATGGTGTCACTGGGCTCAACCTCG 3198593 Query 211071 AGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| ||||| ||||| || ||||| ||||| | |||||| Sbjct 3198592 AGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 3198549 >seq4 Length=108569075 Score = 84.2 bits (92), Expect = 5e-11 Identities = 153/219 (70%), Gaps = 5/219 (2%) Strand=Plus/Minus Query 210896 AAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCT 210955 |||||| | | ||| |||||| ||||||| ||| | ||||| | || | | | | Sbjct 19098991 AAGTCTCAACATAAGATGAAGAATGGACTCCTTT-GAATGTTGTGGTCAGGCAAAATACA 19098933 Query 210956 TCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTC 211015 |||||||||||| |||| || || ||||| || | || || ||| |||||| || ||| Sbjct 19098932 TCCATCTTCCAGTTGCTCACCAGCAAAGATCAGTC--TGCTGATCATGAGGAATTCATTC 19098875 Query 211016 CTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGT 211075 | |||||||||| || || ||||| | || | ||| || ||||| |||| | Sbjct 19098874 ATCAACCTGGATCTTGGTCTTTACCTTTTCCAGTGTAT-TGAGGGTTAAACCTTGAGAAT 19098816 Query 211076 GATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||| ||||| || | || | ||| |||| | |||||| Sbjct 19098815 GATGGTCTTCTCCAT-AGGATTTTTGCAAAAATCTGCAT 19098778 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159008874793505