Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Equus_20caballus_20[refseq_20GCF_5F000002305.2_202007-10-29] 9,637 sequences; 2,474,929,062 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq11 109 5e-19 seq9 105 6e-18 seq8 91.5 1e-13 >seq11 Length=61308211 Score = 109 bits (120), Expect = 5e-19 Identities = 164/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 || ||||| | || | ||||| || || || |||||| || || || ||||||| | Sbjct 57863690 CCGCCTCTCAGACGCAGCACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCGGAA 57863749 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || || || | || || ||||| ||||| ||||| || || | ||||||||||| ||| Sbjct 57863750 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGG 57863809 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACG 39237 | || ||| || ||| ||| || || | || | | || ||||| | |||||| Sbjct 57863810 ATGCCCTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCGCTGGGCTCCACC 57863869 Query 39238 TCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTTTAC 39290 |||| ||||| | || || ||||| || || |||||||| ||||| || || Sbjct 57863870 TCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCATTTTGAC 57863922 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 39056 AGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGG 39115 |||| || || | || | ||||| || || || |||||| || || || ||||| | Sbjct 57863232 AGCCACCCCTGAGACGGAGCACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAG 57863291 Query 39116 CAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGG 39175 ||| || || | || || ||||| ||||| ||||| || || | ||||||||||| || Sbjct 57863292 AAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGG 57863351 Query 39176 GCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCA 39235 | | || ||| || ||| ||| || || | || | | || ||||| | ||||| Sbjct 57863352 GGATGCCCTCCTTATCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCGCTGGGCTCCA 57863411 Query 39236 CGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATC 39285 | |||| ||||| | || || ||||| || || || || || |||||| Sbjct 57863412 CCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAAATCTGCATC 57863461 >seq9 Length=83561422 Score = 105 bits (116), Expect = 6e-18 Identities = 155/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128 ||| | |||||| || || ||| ||| | || ||||| || || | || || || | Sbjct 63528357 GCGGAGCACCAAGTGCAGGGTGGAGTCTCTCTGGATATTGTAGTCTGAGAGAGTGCGGCC 63528298 Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTT 39187 || || ||||||||||| ||||| || |||| |||||||| |||||| | || ||||| Sbjct 63528297 ATCTTCCAGCTGTTTGCCGGCAAAAATCAGACATTGCTGGTCAGGTGGG-ATGCCCTCTT 63528239 Query 39188 TGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGA 39247 |||| |||||| ||| | || | | || || || ||||| || || | |||| Sbjct 63528238 TGTCTTGGATTTTAGCTTTAACATTCTCAATGGTGTCACTGGACTCAACCTCAAGGGTGA 63528179 Query 39248 TACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | | || |||||||| || || |||||||| ||||| Sbjct 63528178 TGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 63528142 >seq8 Length=94057673 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 ||||| || ||||| | |||| || || || ||||| || || || || || | Sbjct 24467406 CCTCCCCTCAAGCGCAGGACCAGGTGCAGAGTAGATTCTTTCTGGATGTTGTAGTCAGAC 24467465 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || || || | || || ||||| || || || || || || | ||||||||||| ||| Sbjct 24467466 AGGGTGCGCCCATCCTCCAGCTGCTTCCCGGCGAAGATGAGCCTCTGCTGGTCGGGGGGG 24467525 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACG 39237 | || ||| |||||| ||| || |||| || | | || ||||| | |||||| Sbjct 24467526 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCACC 24467585 Query 39238 TCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATC 39285 |||| ||||| | || |||||||| || || || || || |||||| Sbjct 24467586 TCCAGGGTGATGGTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCATC 24467633 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 || ||||| | || | |||| || || ||| ||| || || || || || || | Sbjct 24468318 CCACCTCTGAGACGCAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAC 24468377 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || || || | || || ||||| || || || || || || | ||||||||||| ||| Sbjct 24468378 AGGGTGCGCCCATCCTCCAGCTGCTTCCCGGCGAAGATGAGCCTCTGCTGGTCGGGGGGG 24468437 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACG 39237 | || ||| |||||| ||| || |||| || | | || ||||| | |||||| Sbjct 24468438 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCACC 24468497 Query 39238 TCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 |||| ||||| | || |||||||| || || || ||||| ||||| Sbjct 24468498 TCCAGGGTGATGGTCTTCCCCGTCAGGGTCTTCACGAAGATCTGCAT 24468544 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 || ||||| | || | |||| || || ||| ||| || || || || || || | Sbjct 24468090 CCACCTCTGAGACGCAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAC 24468149 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || || || | || || ||||| || || || || || || | ||||||||||| ||| Sbjct 24468150 AGGGTGCGCCCATCCTCCAGCTGCTTCCCGGCGAAGATGAGCCTCTGCTGGTCGGGGGGG 24468209 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACG 39237 | || ||| |||||| ||| || |||| || | | || ||||| | |||||| Sbjct 24468210 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCACC 24468269 Query 39238 TCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATC 39285 |||| ||||| | || |||||||| || || || || || |||||| Sbjct 24468270 TCCAGGGTGATGGTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCATC 24468317 Score = 82.4 bits (90), Expect = 7e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 || ||||| | || | |||| || || ||| ||| || || || || || || | Sbjct 24467634 CCACCTCTGAGACGCAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAC 24467693 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || || || | || || ||||| || || || || || || | ||||||||||| ||| Sbjct 24467694 AGGGTGCGCCCATCCTCCAGCTGCTTCCCGGCGAAGATGAGCCTCTGCTGGTCGGGGGGG 24467753 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACG 39237 | || ||| || ||| ||| || |||| || | | || ||||| | |||||| Sbjct 24467754 ATGCCCTCCTTATCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCACC 24467813 Query 39238 TCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATC 39285 |||| ||||| | || |||||||| || || || || || |||||| Sbjct 24467814 TCCAGGGTGATGGTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCATC 24467861 Score = 82.4 bits (90), Expect = 7e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 || ||||| | || | |||| || || ||| ||| || || || || || || | Sbjct 24467862 CCACCTCTGAGACGCAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAC 24467921 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || || || | || || ||||| || || || || || || | ||||||||||| ||| Sbjct 24467922 AGGGTGCGCCCATCCTCCAGCTGCTTCCCGGCGAAGATGAGCCTCTGCTGGTCGGGGGGG 24467981 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACG 39237 | || ||| |||||| ||| || |||| || | | || ||||| | |||||| Sbjct 24467982 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCACC 24468041 Query 39238 TCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATC 39285 |||| ||||| | || || ||||| || || || || || |||||| Sbjct 24468042 TCCAGGGTGATCGTCTTCCCGGTCAGGGTCTTCACGAAAATCTGCATC 24468089 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429495149466581