Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Equus_20caballus_20[refseq_20GCF_5F000002305.2_202007-10-29] 9,637 sequences; 2,474,929,062 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq9 111 1e-19 seq3 91.5 1e-13 seq11 84.2 1e-11 >seq9 Length=83561422 Score = 111 bits (122), Expect = 1e-19 Identities = 145/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || ||||| ||||| || || ||||| || || ||||| |||| Sbjct 63528142 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTTGAGTCCAGT 63528201 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| ||||| | |||| | |||||||| || | || || || || Sbjct 63528202 GACACCATTGAGAATGTTAAAGCTAAAA-TCCAAGACAAAGAGGGCATCCCACCTGACCA 63528260 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 || || | || |||||||||||||| |||||||| | |||||| | || ||||| Sbjct 63528261 GCAATGTCTGATTTTTGCCGGCAAACAGCTGGAAGATGGCCGCACTCTCTCAGACTACAA 63528320 Query 23790 CATACAAAAAGAGTCCAC 23807 || || | ||| ||||| Sbjct 63528321 TATCCAGAGAGACTCCAC 63528338 >seq3 Length=119479920 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||||||||| |||||||| ||||| || || ||||||||||| ||||| || Sbjct 109160688 AAGATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACTCTCGAGGTTGAACCC 109160629 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 ||| || | |||| |||| || || || | ||||| | || || ||| Sbjct 109160628 TAGGATACAATAGAAAATATAAAGGCCAAGATCCAGGATACGGAAGGAATTCCTCCTGAT 109160569 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || || | | || ||||| ||||| ||| || |||| | || |||| || ||| Sbjct 109160568 CAGCAAAGACTGATCTTTGCTGGCAAGCAAATGAAAGATGGACATGCTTTGTCTGACTAC 109160509 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825 |||| ||||| || ||||| | ||| | || || || Sbjct 109160508 AACAATCAAAAGGAATCCACTCTTCATCTTGTGTTGAG 109160471 >seq11 Length=61308211 Score = 84.2 bits (92), Expect = 1e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || ||||| || || || || ||||| || || || || ||| Sbjct 57863460 ATGCAGATTTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGC 57863401 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || | || | | || || || || | || || || || Sbjct 57863400 GACACCATCGAGAATGTGAAGGCCAAGA-TCCAGGATAAGGAGGGCATCCCCCCCGACCA 57863342 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || ||||| ||||| || |||||||| | |||||| | |||||||| Sbjct 57863341 GCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAA 57863282 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || |||||||| || Sbjct 57863281 CATCCAGAAAGAGTCGAC 57863264 Score = 82.4 bits (90), Expect = 5e-11 Identities = 138/200 (69%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||||||||||| || || || ||||| || || || || ||||| || || || || || Sbjct 57863919 AAAATGCAGATCTTTGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCC 57863860 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | ||||| | || | | || || || || || || || | || || || Sbjct 57863859 AGCGACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAGGGCATCCCCCCCGAC 57863800 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || ||| | | || ||||| ||||| || |||||||| | |||||| | ||||||| Sbjct 57863799 CAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCCGATTAC 57863740 Query 23788 AACATACAAAAAGAGTCCAC 23807 ||||| || |||||||| || Sbjct 57863739 AACATCCAGAAAGAGTCGAC 57863720 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337969900455596