Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Equus_20caballus_20[refseq_20GCF_5F000002305.2_202007-10-29] 9,637 sequences; 2,474,929,062 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq8 145 2e-29 seq11 132 1e-25 seq3 122 2e-22 seq27 105 2e-17 seq9 104 6e-17 >seq8 Length=94057673 Score = 145 bits (160), Expect = 2e-29 Identities = 160/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 |||||| ||||| ||||| |||||||| |||| ||||| || | || || | |||||| Sbjct 24467420 CAGGACCAGGTGCAGAGTAGATTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATC 24467479 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 || ||||||||||| |||||||| || | || |||||||| || || || |||||||| Sbjct 24467480 CTCCAGCTGCTTCCCGGCGAAGATGAGCCTCTGCTGGTCGGGGGGGATGCCCTCCTTGTC 24467539 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 |||||||| ||| || ||||||||||| || ||||| || | ||||| || Sbjct 24467540 CTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGT 24467599 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||| ||||||| || || | ||| | ||||| Sbjct 24467600 CTTCCCCGTCAGGGTCTTCACGAAAATCTGCAT 24467632 Score = 143 bits (158), Expect = 6e-29 Identities = 160/214 (75%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 |||||| ||||| |||||||| || || |||| ||||| || | || || | |||||| Sbjct 24468332 CAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATC 24468391 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 || ||||||||||| |||||||| || | || |||||||| || || || |||||||| Sbjct 24468392 CTCCAGCTGCTTCCCGGCGAAGATGAGCCTCTGCTGGTCGGGGGGGATGCCCTCCTTGTC 24468451 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 |||||||| ||| || ||||||||||| || ||||| || | ||||| || Sbjct 24468452 CTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGT 24468511 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 ||| ||||||| || || | ||| | |||||| Sbjct 24468512 CTTCCCCGTCAGGGTCTTCACGAAGATCTGCATT 24468545 Score = 141 bits (156), Expect = 2e-28 Identities = 159/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 |||||| ||||| |||||||| || || |||| ||||| || | || || | |||||| Sbjct 24467876 CAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATC 24467935 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 || ||||||||||| |||||||| || | || |||||||| || || || |||||||| Sbjct 24467936 CTCCAGCTGCTTCCCGGCGAAGATGAGCCTCTGCTGGTCGGGGGGGATGCCCTCCTTGTC 24467995 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 |||||||| ||| || ||||||||||| || ||||| || | |||||||| Sbjct 24467996 CTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATCGT 24468055 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||| || |||| || || | ||| | ||||| Sbjct 24468056 CTTCCCGGTCAGGGTCTTCACGAAAATCTGCAT 24468088 Score = 141 bits (156), Expect = 2e-28 Identities = 159/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 |||||| ||||| |||||||| || || |||| ||||| || | || || | |||||| Sbjct 24468104 CAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATC 24468163 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 || ||||||||||| |||||||| || | || |||||||| || || || |||||||| Sbjct 24468164 CTCCAGCTGCTTCCCGGCGAAGATGAGCCTCTGCTGGTCGGGGGGGATGCCCTCCTTGTC 24468223 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 |||||||| ||| || ||||||||||| || ||||| || | ||||| || Sbjct 24468224 CTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGT 24468283 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||| ||||||| || || | ||| | ||||| Sbjct 24468284 CTTCCCCGTCAGGGTCTTCACGAAAATCTGCAT 24468316 Score = 136 bits (150), Expect = 9e-27 Identities = 158/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 |||||| ||||| |||||||| || || |||| ||||| || | || || | |||||| Sbjct 24467648 CAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATC 24467707 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 || ||||||||||| |||||||| || | || |||||||| || || || ||||| || Sbjct 24467708 CTCCAGCTGCTTCCCGGCGAAGATGAGCCTCTGCTGGTCGGGGGGGATGCCCTCCTTATC 24467767 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 |||||||| ||| || ||||||||||| || ||||| || | ||||| || Sbjct 24467768 CTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGT 24467827 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||| ||||||| || || | ||| | ||||| Sbjct 24467828 CTTCCCCGTCAGGGTCTTCACGAAAATCTGCAT 24467860 Score = 104 bits (114), Expect = 6e-17 Identities = 98/125 (78%), Gaps = 4/125 (3%) Strand=Plus/Plus Query 4454 TAATCAAAAATATTGTGAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATAT 4513 |||||| ||| || |||| || |||||||| || ||||| |||||||| || || | Sbjct 65158154 TAATCATAAAAAT----AATACCTGTCCATCAGTGATGGAGATGACATTTGTTGGAATGT 65158209 Query 4514 AAGCAGAAACATCACCTGCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCAC 4573 ||||||| |||||||| ||||||||||| | || ||||| || || | || ||||||| Sbjct 65158210 AAGCAGACACATCACCAGCTTGTGTTTCTATGACTGGTAAAGCAGTCAAGGAGCCACCAC 65158269 Query 4574 CAAAA 4578 ||||| Sbjct 65158270 CAAAA 65158274 Score = 84.2 bits (92), Expect = 5e-11 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 5017 CACTTCAATACCTTGCCCCATACACAGGTTGTGTTATAGGAGAATATTTTAGAGATAATG 5076 ||||||| ||| | || || || | || ||| ||| ||||||||||| || ||||||| Sbjct 65158609 CACTTCAGTACTTGGCTCCTTATTCTGGCTGTTCTATGGGAGAATATTTCAGGGATAATG 65158550 Query 5077 GTAAACATGCTTTAATCATCTACGATGATTTAAGTAAACAATTCAA 5122 | ||||||||||| |||||||| || || ||| ||||| |||| Sbjct 65158549 GCAAACATGCTTTGATCATCTATGACGACTTATCCAAACAGGTCAA 65158504 >seq11 Length=61308211 Score = 132 bits (146), Expect = 1e-25 Identities = 159/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||| || ||||| || || || ||||| |||| |||||||||| | ||| | ||||| Sbjct 57863704 CAGCACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCGGAAAGAGTGCGGCCATC 57863763 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| |||||||| || || ||||| || | || |||||||| || || || ||||| || Sbjct 57863764 TTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGGATGCCCTCCTTATC 57863823 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 |||||||| |||||| ||||||||||| || ||||| || | ||||| || Sbjct 57863824 CTGGATCTTGGCCTTCACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGT 57863883 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 |||||| |||| || || | || | |||||||| Sbjct 57863884 CTTGCCGGTCAGGGTCTTCACAAAGATCTGCATTTT 57863919 Score = 131 bits (144), Expect = 4e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || ||||| || || || ||||| |||| |||||||| | | ||| | |||||| Sbjct 57863249 AGCACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCT 57863308 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || || ||||| || | || |||||||| || || || ||||| || Sbjct 57863309 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGGATGCCCTCCTTATCC 57863368 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||||||| ||||||||||| || ||||| || | ||||| ||| Sbjct 57863369 TGGATCTTGGCCTTCACATTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTC 57863428 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| |||| || || | ||| | ||||| Sbjct 57863429 TTGCCGGTCAGGGTCTTCACGAAAATCTGCAT 57863460 Score = 127 bits (140), Expect = 5e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||| || ||||| |||||||| || || |||| ||||| || | || || | |||||| Sbjct 57863476 CAGAACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATC 57863535 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 || |||||||| || || ||||| || | || |||||||| || || || ||||| || Sbjct 57863536 CTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGGATGCCCTCCTTATC 57863595 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 |||||||| |||||| ||||||||||| || ||||| || | ||||| || Sbjct 57863596 CTGGATCTTGGCCTTCACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGT 57863655 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 |||||| |||| || || | ||| | ||||| Sbjct 57863656 CTTGCCGGTCAGGGTCTTCACGAAAATCTGCAT 57863688 >seq3 Length=119479920 Score = 122 bits (134), Expect = 2e-22 Identities = 162/225 (72%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 || |||||||| ||||| || ||||||||||| ||||| ||||| || | ||||| Sbjct 109160464 ACAAAGTCTCAACACAAGATGAAGAGTGGATTCCTTTTGATTGTTGTAGTCAGACAAAGC 109160523 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 ||||||| | ||||| ||||| ||||| |||| ||| || || || ||||| || Sbjct 109160524 ATGTCCATCTTTCATTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCC 109160583 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||| | || |||||||| ||| | | ||| || || || ||| ||| || || | Sbjct 109160584 TTCCGTATCCTGGATCTTGGCCTTTATATTTTCTATTGTATCCTAGGGTTCAACCTCGAG 109160643 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 ||||| ||||| ||||| | ||||| | ||| | ||||| || Sbjct 109160644 AGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATCTT 109160688 >seq27 Length=39960074 Score = 105 bits (116), Expect = 2e-17 Identities = 127/173 (73%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 7552 CAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATG 7611 ||| | ||||| |||||| | || || ||||| || || || |||||||| | ||||| Sbjct 5205369 CAAATCTACAATGTTATTGTAACCGCCCATGCATTCGTAATAATTTTCTTCATAGTTATA 5205310 Query 7612 CCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGAT 7671 || | ||||| || || || ||||| ||||| || || |||| ||||| | || ||| Sbjct 5205309 CCTATCATGATTGGAGGATTTGGAAACTGATTAGTCCCCCTAATAATTGGAACACCCGAT 5205250 Query 7672 ATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTT 7724 || ||||| || | | ||||||||||| || ||| |||| || || || || Sbjct 5205249 ATAGCTTTCCCTTGAATAAACAATATAAGCTTCTGACTACTCCCCCCATCATT 5205197 >seq9 Length=83561422 Score = 104 bits (114), Expect = 6e-17 Identities = 139/191 (73%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | ||| || ||||| ||| | |||| |||||| || | | ||| | |||||| Sbjct 63528353 AGCACCAAGTGCAGGGTGGAGTCTCTCTGGATATTGTAGTCTGAGAGAGTGCGGCCATCT 63528294 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || ||||| || || || || || || | ||| ||||| || || || || || |||||| Sbjct 63528293 TCCAGCTGTTTGCCGGCAAAAATCAGACATTGCTGGTCAGGTGGGATGCCCTCTTTGTCT 63528234 Query 225622 TGGATCTTTTGCTTCA-CAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 ||||| ||| |||| | || || |||||||| || || || || | ||||| || Sbjct 63528233 TGGAT-TTTAGCTTTAACATTCTCAATGGTGTCACTGGACTCAACCTCAAGGGTGATGGT 63528175 Query 225681 CTTGCCCGTCA 225691 ||||||||||| Sbjct 63528174 CTTGCCCGTCA 63528164 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192383953328078