Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Equus_20caballus_20[refseq_20GCF_5F000002305.2_202007-10-29] 9,637 sequences; 2,474,929,062 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq14 87.8 1e-12 seq8 84.2 2e-11 >seq14 Length=93904894 Score = 87.8 bits (96), Expect = 1e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 114284 TTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 114343 || || || || ||||| |||| || | ||||| | | || | |||||| || ||| Sbjct 85181029 TTGAGTTCTCTACTGAGAACTAAATTAATTCTGTCCTTTAACGGCCGATTCTTCTCAGGG 85180970 Query 114344 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTACCT 114391 ||||||||||| ||||| |||||||| ||||||| |||||||||||| Sbjct 85180969 ATGGAGAACCAGGTCTTCCTACCCATAATCACCAAATTCTGCTTACCT 85180922 >seq8 Length=94057673 Score = 84.2 bits (92), Expect = 2e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAG 30076 |||||||||||||| || ||||| || || || | || || ||||| ||| ||| Sbjct 41185522 AAATGCCTCCACTGAAAGCCGTAAACTGGGCCTAAATCCCCTTCTTCTCTGGCGGAGAAT 41185463 Query 30077 CCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCG 30136 ||| ||||||| ||||||| ||| || ||||| |||||||| || || ||||| Sbjct 41185462 CCCAGGCTGTCCAAGAAGTCTCGGGACCCATTGGCATCCCAGATTTTCACTCCCTTGCAA 41185403 Query 30137 GAGAGCTCTTTGGAGTTTGTGGACCC 30162 || || || || | |||||||| || Sbjct 41185402 GACAGTTCATTAGCATTTGTGGATCC 41185377 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406115495751382