Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Equus_20caballus_20[refseq_20GCF_5F000002305.2_202007-10-29] 9,637 sequences; 2,474,929,062 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq1 176 6e-39 seq7 127 3e-24 seq15 116 5e-21 >seq1 Length=185838109 Score = 176 bits (194), Expect = 6e-39 Identities = 539/820 (66%), Gaps = 29/820 (4%) Strand=Plus/Plus Query 47902 ATATATTTTCCATAAAATCAAATGGATTAACTGCATTATAAAtttttttAAATCCTAATT 47961 ||| || | | | ||| ||||||||||| |||| | ||| ||| |||| | | || Sbjct 114579002 ATACATATACAAAAAAGTCAAATGGATTTTCTGCTCCAAAAACCTTTCTAAAACTAAGTT 114579061 Query 47962 CTGAAATCAGTCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCA---CAATTCA 48018 ||| || | || ||||| || | ||| || | | | | ||||| | |||| || Sbjct 114579062 CTGGCATAAACCTGTCTGCTACTATTTCCATGT---TCTGCCTCATTAAAATGCAATGCA 114579118 Query 48019 TTCCTATAAGTTTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCAT 48078 |||| ||||| | | ||| |||| || || ||||||||||| || | | | | Sbjct 114579119 TTCCAATAAGCCACAAGGCAAGA-CCTCGGTTAGGAACTCTTGTTCTATCTTAATAACGC 114579177 Query 48079 CCACTATTATCGATGTTACCGTTTCCTCACTTGGTGGATACAACAAATGTTTAAACATTA 48138 | ||||| | |||| ||| || ||| || ||||| |||||| |||| Sbjct 114579178 TGATAATTATTTCTTTTACTTTTTAGTCTGCAGGTTTGTATAACAAGCATTTAAATATTA 114579237 Query 48139 AACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGA 48198 || ||||| ||||| || | ||| ||| |||| | | |||||| || |||||||||| Sbjct 114579238 GGCAGGCAAAGTCACAGTGTAAACC-TCA-CTCTGCCCAGTAATTCATTGGAAAATGTGA 114579295 Query 48199 GACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGA 48258 |||||| ||| | ||| ||||| | ||| | || ||||| ||| | || Sbjct 114579296 TCGTAGGCATTGATCCTCATTTCTTGAGGTAGAATGCTAGCGTGAAAG---CAGCAGAG- 114579351 Query 48259 ATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTGTGTA 48318 || | || || ||| |||| | | || ||||||||| | ||||| ||| Sbjct 114579352 --ATTTCCTCCACTGCCCCAAAGCCTACCACTCATTCTCCGTAAGTTGCTTCTTTG---- 114579405 Query 48319 TCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAA 48378 ||| | || |||| ||||| ||||| ||||||| |||||||||| |||||||| | Sbjct 114579406 TCCCCAGTCAGGCCCTGTCAGC---CTTCTCTACACAAAGCATTGTTTCAATAGCATTGA 114579462 Query 48379 AGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTT 48438 ||| |||| | || |||| |||||||| | |||| || | | ||||| || |||| Sbjct 114579463 AGACAAAGGCCTCCTCTTTGCAATCTTTAATGCAAGTGTCAACAAGGAGACTCTATATTT 114579522 Query 48439 CGGAGTGAATATTTTCAATTGCCATC-TGAAATCCGTAAAAACATCTCGCTTCTGTGATC 48497 | || | | || || | || || | ||||| || | ||||| | |||||||| ||| Sbjct 114579523 CAGAATATAAGTTGTCCA-TGTCACCTTGAAAGCCACAGAAACACATTGCTTCTGTAATC 114579581 Query 48498 TGTACCTCCGTACAAAATCGTTCAG--CCAAATTCTCATTTACTATTCCATCACTAGCAG 48555 ||||| | | || |||| | ||| ||| | |||| | | ||||||||| || | Sbjct 114579582 TGTACTTTTGGACGAAAT--TGCAGCACCAGGCTTTCATATCCAGCTCCATCACTTGCTG 114579639 Query 48556 CAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCAGT 48615 ||| || || | | | | ||||| | | || | |||| ||||||| Sbjct 114579640 CAACGAAAGCCAGAGCCCGAGATACAAAATCTCTCTCCACAGGCTTCAG-GGCTTCCAGT 114579698 Query 48616 CATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTT 48675 | || || || || |||||| || |||||||||||||| || ||||| ||||| | Sbjct 114579699 GCTGAATGTCCTTGGAGTGATCTACCTCCTCAGCTGTCCAAAAGGAAGCCTCAGCTTTCT 114579758 Query 48676 TATACATATTCCATATATCACTGTATTGGATTGGGAAAAT 48715 | ||| | ||| || ||| |||| || || ||||| Sbjct 114579759 GGTCCATCTGCCAAATGCCACGATATTCGAGAGGAAAAAT 114579798 >seq7 Length=98542428 Score = 127 bits (140), Expect = 3e-24 Identities = 108/133 (81%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 77127 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 77186 ||||||||||| ||||| ||||| |||||||| || || |||||||| ||||| | || Sbjct 72048791 TGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTGCTGGTATAAGGTTCAATGGAC 72048732 Query 77187 TCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTA 77246 ||||| ||||||| ||| |||||||| |||||||| ||||| || || | | |||||| Sbjct 72048731 TCATTATTTCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAACTG 72048672 Query 77247 TTTCTGAGACCAT 77259 ||||| | ||||| Sbjct 72048671 TTTCTTACACCAT 72048659 Score = 109 bits (120), Expect = 8e-19 Identities = 111/142 (78%), Gaps = 2/142 (1%) Strand=Plus/Minus Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458 || || ||||| || | || ||||| ||||| |||||||| || |||||||| || ||| Sbjct 72031640 GTACCAGCATTGAAGAGAGTGGGAGAGGCATGGGTAAACCACTTCTCAGAAAGAAGGTTG 72031581 Query 78459 TATGTTTCAATAGCTGATTCTATGTCC-CATTGATGAATTCCTACCGCTACACGCATCAA 78517 |||||||||||||| | || || || || || ||||| || || | ||| | |||||| Sbjct 72031580 TATGTTTCAATAGCAGCATCAATATCTTCACTG-TGAATCCCCACAGATACCCTCATCAA 72031522 Query 78518 CATATGCTGAGGTCTTTCAACC 78539 |||||| || ||||||||| || Sbjct 72031521 CATATGTTGTGGTCTTTCAGCC 72031500 Score = 93.3 bits (102), Expect = 6e-14 Identities = 110/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 78003 ACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGT 78062 ||||||||||| |||||||| || ||||| || |||| || || || | || | || Sbjct 72038800 ACTCGTTTCATGAAGAGATCCGGAATCCAAAGGGCAAAGAAAAGGTCCCTGGCACGCTGC 72038741 Query 78063 TCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGT 78122 ||||| |||||||| ||||| || | |||||| ||||| | || || ||||||| || Sbjct 72038740 TCTTCCTTTCCTGTGTTCTTCTTTAAATCGAGGAACTCAAAGATGTCTAAATGCCAAGGC 72038681 Query 78123 TCTAGATATATTGCCATAACTCCAGGTCG 78151 || || || || || | | |||||||| Sbjct 72038680 TCCAGGTAAATAGCAAATGCCCCAGGTCG 72038652 >seq15 Length=91571448 Score = 116 bits (128), Expect = 5e-21 Identities = 97/119 (82%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224 |||||||| ||||| | ||| || ||||||||||| |||||||| ||||| ||||| ||| Sbjct 83357676 TCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCATCAGTCCTCGTTTCTTG 83357735 Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGC 48283 ||||| ||||| | || ||||| |||||||| || || ||||| || || ||||| || Sbjct 83357736 AGCCAGAATATGGATGCAAAAGAGCCAGAAAAAAAGATTCCTTCCACTGCGGCAAAGGC 83357794 Score = 96.9 bits (106), Expect = 5e-15 Identities = 109/144 (76%), Gaps = 4/144 (3%) Strand=Plus/Plus Query 47790 GTTC-TTTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTGA---GACATAACTCC 47845 |||| |||| |||||| |||| | | |||| ||| ||| | || ||||| ||||| Sbjct 83356278 GTTCATTTAGAAGTCAGCATCCAGGGTAAAAGAATTCTCTGTTGGACTGGACATCACTCC 83356337 Query 47846 CATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATAT 47905 ||| | ||||| || || || | ||||| || || ||||| || ||||||| ||| || Sbjct 83356338 CATCCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAAAT 83356397 Query 47906 ATTTTCCATAAAATCAAATGGATT 47929 ||| |||||||| ||||||||||| Sbjct 83356398 ATTCTCCATAAAGTCAAATGGATT 83356421 Score = 84.2 bits (92), Expect = 3e-11 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 48638 TACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACATATTCCATATATCACT 48697 ||| || |||||||||||||| || ||||| ||||| |||||||| | ||| |||||| Sbjct 83360718 TACCTCCTCAGCTGTCCAAAAGGAAGCCTCAGCTTTCTTATACATCTGCCAAATATCATG 83360777 Query 48698 GTATTGGATTGGGAAAATAACAAA 48721 ||||| ||| ||||| || ||||| Sbjct 83360778 GTATTCGATGGGGAAGATGACAAA 83360801 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694585118459680