Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Equus_20caballus_20[refseq_20GCF_5F000002305.2_202007-10-29] 9,637 sequences; 2,474,929,062 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq1 156 6e-33 seq7 132 7e-26 seq15 107 3e-18 seq9 107 3e-18 >seq1 Length=185838109 Score = 156 bits (172), Expect = 6e-33 Identities = 398/592 (67%), Gaps = 24/592 (4%) Strand=Plus/Plus Query 46617 TTTAAACATTAAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTT 46676 |||||| |||| || ||||| ||||| || | ||| || |||| | | |||||| || Sbjct 114579227 TTTAAATATTAGGCAGGCAAAGTCACAGTGTAAACCT-CA-CTCTGCCCAGTAATTCATT 114579284 Query 46677 AGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATA-TAGCCGCGAAAG 46735 |||||||||| | ||||||| ||| | || ||||| | ||| |||| | ||||| Sbjct 114579285 GGAAAATGTGATCGTAGGCATTGATCCTCATTTCTTGAGGTAGAATGCTAGC-GTGAAAG 114579343 Query 46736 ATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGG 46795 ||| | ||| | | || || ||| | || | || | || ||||||||| | | Sbjct 114579344 ---CAGCAGAGATTT---CCTCCACTGCCCCAAAGCCTACCACTCATTCTCCGTAAGTTG 114579397 Query 46796 CATCATTATGAATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTT 46855 | || || | || | | |||| |||||||| || ||||||| ||||||||| Sbjct 114579398 CTTCTTTGT----CCCCAGTCAGGCCCTGTCAGCCTT---CTCTACACAAAGCATTGTTT 114579450 Query 46856 CTATAGCATTAAAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAA 46915 | |||||||| |||| |||| | || | | |||||||| | || || | | | Sbjct 114579451 CAATAGCATTGAAGACAAAGGCCTCCTCTTTGCAATCTTTAATGCAAGTGTCAACAAGGA 114579510 Query 46916 GACTATACATTTCTGAATGAATGTTTTCAATAGCCATCT-GAAATCCGTAAAAACATCTT 46974 |||| || ||||| |||| | ||| || || | || || |||| || | ||||| || Sbjct 114579511 GACTCTATATTTCAGAATATAAGTTGTCCAT-GTCACCTTGAAAGCCACAGAAACACATT 114579569 Query 46975 GCTTCAGTAATCTGTACCTCTGTACAAAATCGTTCAG--ACAAATTCTCATTCACTATTC 47032 ||||| ||||||||||| | || || |||| | ||| || | |||| | || Sbjct 114579570 GCTTCTGTAATCTGTACTTTTGGACGAAAT--TGCAGCACCAGGCTTTCATATCCAGCTC 114579627 Query 47033 CATCACTAGCAGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCA 47092 ||||||| || |||| || |||| | | | ||||| | | || | | ||| Sbjct 114579628 CATCACTTGCTGCAACGAAAGCCAGAGCCCGAGATACAAAATCTCTCTCCACAGGCTTCA 114579687 Query 47093 GTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACG 47152 | ||||||| | || || || || |||||| || ||||||||||| || || | Sbjct 114579688 G-GGCTTCCAGTGCTGAATGTCCTTGGAGTGATCTACCTCCTCAGCTGTCCAAAAGGAAG 114579746 Query 47153 CCTCTGCTTTTTTATACATATTCCATATATCACGATATTGGATCGGAAAAAT 47204 |||| ||||| | | ||| | ||| || ||||||||| || |||||||| Sbjct 114579747 CCTCAGCTTTCTGGTCCATCTGCCAAATGCCACGATATTCGAGAGGAAAAAT 114579798 >seq7 Length=98542428 Score = 132 bits (146), Expect = 7e-26 Identities = 109/133 (82%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 75722 TGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 75781 ||||||||||| ||||| ||||| |||||||| || || |||||||| ||||| | || Sbjct 72048791 TGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTGCTGGTATAAGGTTCAATGGAC 72048732 Query 75782 TCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTA 75841 ||||| ||||||| ||| ||||||||||||||||| ||||| || || | | |||||| Sbjct 72048731 TCATTATTTCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAACTG 72048672 Query 75842 TTTCTGAGACCAT 75854 ||||| | ||||| Sbjct 72048671 TTTCTTACACCAT 72048659 Score = 111 bits (122), Expect = 2e-19 Identities = 124/166 (75%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 77339 CTAAATAGtttttttGTTTCCTTGTGTAGATTCGATACGGCTATTCTAGCAGCTAGAATT 77398 || || | ||| |||||||| ||||| | ||| || || || || || || || || || Sbjct 72026861 CTGAACACTTTCTTTGTTTCTTTGTGCAAATTAGAGACAGCAATCCTTGCTGCCAGGATA 72026802 Query 77399 GCATAGTCAGGATGTTGTGTAGTGCAGGTGGCTGCTATTTCTGCCGCTAAAGTATCTAAT 77458 ||||||||||| || | ||||| |||| || ||| |||| || || |||||||||| | Sbjct 72026801 GCATAGTCAGGGTGCTTAGTAGTCAAGGTCGCAGCTGTTTCAGCAGCCAAAGTATCTAGT 72026742 Query 77459 TCTATAGTAGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGG 77504 || | ||||| || || | |||| ||||| || |||||||||| Sbjct 72026741 TCCACGGTAGTGACCCCACTGTATAAGCCTTGGATTACTTTCATGG 72026696 Score = 102 bits (112), Expect = 1e-16 Identities = 107/138 (78%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053 || || ||||| || | || ||||| ||||| || ||||| || |||||||| || ||| Sbjct 72031640 GTACCAGCATTGAAGAGAGTGGGAGAGGCATGGGTAAACCACTTCTCAGAAAGAAGGTTG 72031581 Query 77054 TATGTTTCAATAACTGCTTCTATATCC-CATTGATGAATTCCTACAGCGACACGCATCAA 77112 |||||||||||| | || || ||||| || || ||||| || |||| || | |||||| Sbjct 72031580 TATGTTTCAATAGCAGCATCAATATCTTCACTG-TGAATCCCCACAGATACCCTCATCAA 72031522 Query 77113 CATATGCTGAGGTCGTTC 77130 |||||| || |||| ||| Sbjct 72031521 CATATGTTGTGGTCTTTC 72031504 Score = 87.8 bits (96), Expect = 3e-12 Identities = 114/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 75989 AGTTCGCAACTCGCCTCTAACGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTAAGA 76048 || || || || || || || || || |||||||| ||||| || || | |||||| || Sbjct 72043667 AGGTCACAGCTGGCTTCCAAGGCTCCATAATAAATGGTTTCAAAGATTTGCTTATTCAGT 72043608 Query 76049 TCTTGCGCTTCAAGACTATCAAAAGGATAATGTAAAAGAATAAATGCATCTGCTAGTCCC 76108 || || || |||| ||||||||||| | |||||||| |||||||| || || Sbjct 72043607 AACTGGGCCTCTGGACTCTCAAAAGGATACCTCATCAGAATAAAAGCATCTGCCAGACCT 72043548 Query 76109 TGAACTCCAATACCAATAGGTCTATGTCTCTTATTGGA 76146 || || ||||| ||||| || | ||| | ||||| || Sbjct 72043547 TGTACCCCAATCCCAATGGGGCGATGGCGTTTATTTGA 72043510 >seq15 Length=91571448 Score = 107 bits (118), Expect = 3e-18 Identities = 98/124 (79%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713 |||||||| ||||| | ||| || ||||||||||| || ||||| ||||| || || ||| Sbjct 83357676 TCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCATCAGTCCTCGTTTCTTG 83357735 Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773 ||||| ||||| | || ||||| |||||||| || || ||||| || || || || || Sbjct 83357736 AGCCAGAATATGGATGCAAAAGAGCCAGAAAAAAAGATTCCTTCCACTGCGGCAAAGGCT 83357795 Query 46774 ACAA 46777 |||| Sbjct 83357796 ACAA 83357799 >seq9 Length=83561422 Score = 107 bits (118), Expect = 3e-18 Identities = 98/124 (79%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 46652 CTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTT 46711 |||||||||| || || | ||| || ||||| ||||| |||||||| || || | || | Sbjct 47795451 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATAAGACCTCTTTTCT 47795510 Query 46712 TGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATG 46771 | ||||| |||||||| || |||||||| || ||||| || ||||||||||| || || | Sbjct 47795511 TTAGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGG 47795570 Query 46772 CGAC 46775 | || Sbjct 47795571 CCAC 47795574 Score = 84.2 bits (92), Expect = 3e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 47127 TACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTCCATATATCACG 47186 ||| ||||| ||||||||||| || |||| ||| | ||||||||| ||||| ||||| | Sbjct 47803400 TACCTCTTCCGCTGTCCAGAAGGATGCCTGTGCCTGTTTATACATTTTCCAAATATCGGG 47803459 Query 47187 ATATTGGATCGGAAAAATAACAAATC 47212 || ||||| ||||| || ||||||| Sbjct 47803460 GTACTGGATTGGAAAGATGACAAATC 47803485 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712848518139840