Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Equus_20caballus_20[refseq_20GCF_5F000002305.2_202007-10-29] 9,637 sequences; 2,474,929,062 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq8 159 8e-34 seq11 156 1e-32 seq3 122 2e-22 >seq8 Length=94057673 Score = 159 bits (176), Expect = 8e-34 Identities = 169/221 (76%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || ||||||||||| || || || || || ||||||||||| |||||||| || ||| Sbjct 24468085 CAGATTTTCGTGAAGACCCTGACCGGGAAGACGATCACCCTGGAGGTGGA--GCCCAGCG 24468028 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||||||||| ||||| |||||||| || || ||||| || ||||||| Sbjct 24468027 ACACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGC 24467968 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||||||||| || ||||| || ||||| | || || | || || ||| Sbjct 24467967 AGAGGCTCATCTTCGCCGGGAAGCAGCTGGAGGATGGGCGCACCCTGTCTGACTACAACA 24467908 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||| || || || || ||||| || || || | |||||| Sbjct 24467907 TCCAGAAGGAGTCCACTCTGCACCTGGTCCTGCGTCTCAGA 24467867 Score = 158 bits (174), Expect = 3e-33 Identities = 161/208 (77%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || ||||||||||| || || || || || || |||||||| |||||||| || ||| Sbjct 24467629 CAGATTTTCGTGAAGACCCTGACGGGGAAGACCATCACCCTGGAGGTGGA--GCCCAGCG 24467572 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||||||||| ||||| |||||||| || || ||||| || ||||||| Sbjct 24467571 ACACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGC 24467512 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||||||||| || ||||| || ||||| | || || | || || ||| Sbjct 24467511 AGAGGCTCATCTTCGCCGGGAAGCAGCTGGAGGATGGGCGCACCCTGTCTGACTACAACA 24467452 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| |||||||| || ||||| || || Sbjct 24467451 TCCAGAAAGAATCTACTCTGCACCTGGT 24467424 Score = 154 bits (170), Expect = 4e-32 Identities = 168/221 (76%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || ||||||||||| || || || || || || |||||||| |||||||| || ||| Sbjct 24468313 CAGATTTTCGTGAAGACCCTGACGGGGAAGACCATCACCCTGGAGGTGGA--GCCCAGCG 24468256 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||||||||| ||||| |||||||| || || ||||| || ||||||| Sbjct 24468255 ACACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGC 24468196 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||||||||| || ||||| || ||||| | || || | || || ||| Sbjct 24468195 AGAGGCTCATCTTCGCCGGGAAGCAGCTGGAGGATGGGCGCACCCTGTCTGACTACAACA 24468136 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||| || || || || ||||| || || || | |||||| Sbjct 24468135 TCCAGAAGGAGTCCACTCTGCACCTGGTCCTGCGTCTCAGA 24468095 Score = 150 bits (166), Expect = 4e-31 Identities = 167/221 (76%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || ||||||||||| || || || || || || |||||||| |||||||| || ||| Sbjct 24467857 CAGATTTTCGTGAAGACCCTGACGGGGAAGACCATCACCCTGGAGGTGGA--GCCCAGCG 24467800 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||||||||| ||||| ||||| || || || ||||| || ||||||| Sbjct 24467799 ACACCATCGAGAACGTCAAGGCCAAGATCCAGGATAAGGAGGGCATCCCCCCCGACCAGC 24467740 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||||||||| || ||||| || ||||| | || || | || || ||| Sbjct 24467739 AGAGGCTCATCTTCGCCGGGAAGCAGCTGGAGGATGGGCGCACCCTGTCTGACTACAACA 24467680 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||| || || || || ||||| || || || | |||||| Sbjct 24467679 TCCAGAAGGAGTCCACTCTGCACCTGGTCCTGCGTCTCAGA 24467639 Score = 150 bits (166), Expect = 4e-31 Identities = 167/221 (76%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || || || || || || |||||||| |||||||| || ||| Sbjct 24468541 CAGATCTTCGTGAAGACCCTGACGGGGAAGACCATCACCCTGGAGGTGGA--GCCCAGCG 24468484 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||||||||| ||||| |||||||| || || ||||| || ||||||| Sbjct 24468483 ACACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGC 24468424 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||||||||| || ||||| || ||||| | || || | || || ||| Sbjct 24468423 AGAGGCTCATCTTCGCCGGGAAGCAGCTGGAGGATGGGCGCACCCTGTCTGACTACAACA 24468364 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||| || || || || ||||| || || || | |||||| Sbjct 24468363 TCCAGAAGGAGTCCACTCTGCACCTGGTCCTGCGTCTCAGA 24468323 >seq11 Length=61308211 Score = 156 bits (172), Expect = 1e-32 Identities = 177/235 (75%), Gaps = 7/235 (3%) Strand=Plus/Minus Query 177910 AGGTTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGG 177969 |||| ||||||| | || || ||||| || || || || || || |||||||| |||| Sbjct 57863924 AGGTCAAAATGC---AGATCTTTGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGG 57863868 Query 177970 TGGAAAGCTCAG--ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAAT 178027 |||| || ||| |||||||||||||||| || ||||| ||||| || || || || Sbjct 57863867 TGGA--GCCCAGCGACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAGGGCAT 57863810 Query 178028 CCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCT 178087 ||| || |||||||| | || ||||| || || || ||||| |||||||| | ||||| Sbjct 57863809 CCCCCCCGACCAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCT 57863750 Query 178088 TGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 | ||||||| ||| |||| ||||| || || ||||| || || || | || ||| Sbjct 57863749 TTCCGATTACAACATCCAGAAAGAGTCGACCCTGCACCTGGTGCTGCGTCTGAGA 57863695 Score = 149 bits (164), Expect = 2e-30 Identities = 159/208 (76%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || ||||||||||| || || || || || || |||||||| |||||||| || ||| Sbjct 57863457 CAGATTTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGA--GCCCAGCG 57863400 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||| || || ||||| ||||| || || || ||||| || ||||||| Sbjct 57863399 ACACCATCGAGAATGTGAAGGCCAAGATCCAGGATAAGGAGGGCATCCCCCCCGACCAGC 57863340 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| || || || ||||| |||||||| | |||||| | ||||| ||| Sbjct 57863339 AGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAACA 57863280 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| ||||| || || ||||| || || Sbjct 57863279 TCCAGAAAGAGTCGACCCTGCACCTGGT 57863252 Score = 141 bits (156), Expect = 2e-28 Identities = 165/221 (75%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || ||||||||||| || || || || || || |||||||| |||||||| || ||| Sbjct 57863685 CAGATTTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGA--GCCCAGCG 57863628 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 |||||||||||||||| || ||||| ||||| || || || ||||| || ||||||| Sbjct 57863627 ACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAGGGCATCCCCCCCGACCAGC 57863568 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| || || || ||||| || ||||| | || || | || || ||| Sbjct 57863567 AGAGGCTCATCTTTGCAGGCAAGCAGCTGGAGGATGGGCGCACCCTGTCTGACTACAACA 57863508 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||| || || || || ||||| || ||| || | |||||| Sbjct 57863507 TCCAGAAGGAGTCCACTCTGCACCTGGTTCTGCGTCTCAGA 57863467 >seq3 Length=119479920 Score = 122 bits (134), Expect = 2e-22 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||||||||| || || || || || ||||| |||||||| ||| || || Sbjct 109160682 CAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACTCTCGAGGTTGAACCCTAGGAT 109160623 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || | || ||||| ||||| | |||||||| ||||| || |||||| Sbjct 109160622 ACAATAGAAAATATAAAGGCCAAGATCCAGGATACGGAAGGAATTCCTCCTGATCAGCAA 109160563 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||| ||||| || || || || | |||||||| || | | || || ||| Sbjct 109160562 AGACTGATCTTTGCTGGCAAGCAAATGAAAGATGGACATGCTTTGTCTGACTACAACAAT 109160503 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 ||||| ||||| || || |||||||| |||||||| Sbjct 109160502 CAAAAGGAATCCACTCTTCATCTTGTGTTGAGACT 109160468 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203582570418578