Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Equus_20przewalskii_20[refseq_20GCF_5F000696695.1_202014-06-05] 53,097 sequences; 2,395,954,271 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq2359 421 5e-113 seq543 172 4e-38 seq2547 123 2e-23 seq406 116 3e-21 seq2188 82.4 6e-11 >seq2359 Length=294480 Score = 421 bits (466), Expect = 5e-113 Identities = 439/578 (76%), Gaps = 16/578 (3%) Strand=Plus/Minus Query 3955 AAAAGACATTTGTATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTC 4014 |||| || || |||||| |||||| ||||||||||||||||||||||||| | |||| Sbjct 165504 AAAACACCTTCACATTAATCATTCTTTTCATATACTTCAAATTTGTACTTAAGGCCTTTC 165445 Query 4015 TCTTCTTGCACATTAGAAAGAACACTTGGATATTCTATCAAAAGTTTGTATTTCTCTAGA 4074 || || || |||| ||||||||||| |||||||||| | |||||| ||||| | | Sbjct 165444 TCCTCCTGGACATCAGAAAGAACACCTGGATATTCTGGGAGAAGTTT----TTCTCCAAA 165389 Query 4075 TCAAATTCTGGAAAAAAGGTGTCACATTCAAAGTCTTGCATGATCCTAGTCACAAACAGT 4134 ||| |||||||||||| ||||||| |||||| || |||||| | || |||||||| ||| Sbjct 165388 TCAGTTTCTGGAAAAAATGTGTCACTTTCAAATTCCTGCATGCTACTTGTCACAAATAGT 165329 Query 4135 TTAAGATCGCATGGATAACTCATAGCTTCTTTATACACAGAACTACCTCCAATTATCCAG 4194 |||||| || ||| | || | ||||| ||||| |||||||| ||||| | |||||| Sbjct 165328 CTAAGATGGCCTGGCTTGTTCCTTGCTTCCTTATAAACAGAACTGCCTCCCACTATCCAA 165269 Query 4195 ACCATGTCTACTTTATTTGCTAATTCTGGCTGTTCGGTAAGTTTTAAAGCATCATCTAAA 4254 |||||||| | |||||||| ||||||||| ||| | |||||| ||| |||||||| ||| Sbjct 165268 ACCATGTCCATTTTATTTGTTAATTCTGGTTGTGCAGTAAGTGTTAGGGCATCATCCAAA 165209 Query 4255 CTCTTAGCTAAAAAATGAGCTCTATGTGGAAGCTCCTTTAGTTCCTTGCTGAGAACAACA 4314 || || | | ||||||||||| |||||| | | ||| ||||| | |||||||| | | Sbjct 165208 CTTTTGGGAAGAAAATGAGCTCCTTGTGGACGTTACTTGAGTTCTCTACTGAGAACTAAA 165149 Query 4315 TTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGGAATTGAGAACCAAGTCTTTTTACCC 4374 ||| ||||| | |||||||| || |||| |||||||| |||||| ||||| ||||| Sbjct 165148 TTATTTCTGTCCTTTAAAGGTCGAATCTTTTCAGGAATGGAGAACGGGGTCTTCCTACCC 165089 Query 4375 ATAATCACTAAATTCTGTTTATCTGGTACAGAAGATGTAGTAGTCATTCTTTGG------ 4428 |||||||| |||||||||||| || || ||||| || || |||||||||||| Sbjct 165088 ATAATCACCAAATTCTGTTTACCTTCTAATGAAGAGGTTGTGGTCATTCTTTGGAACTAC 165029 Query 4429 ------AAATGTTTAAAATCATTCATAAGTCTTGGCCAAGGCAAGTTACCTTGTTTGCCA 4482 || | || || || ||| | ||| | |||| ||||| || || | ||||| Sbjct 165028 GAATTCAACTACTTGAATTCGTTCCTGAGTGTGGGCCGAGGCAGGTCGCCCTTCTTGCCC 164969 Query 4483 ATGCCCATGTTTTGAGCTACAGCAACAATGCAGTTTAG 4520 |||||||| || || | || | |||| ||||||| Sbjct 164968 ATGCCCATATTCTGGGACACGACGACAACTTAGTTTAG 164931 >seq543 Length=843532 Score = 172 bits (190), Expect = 4e-38 Identities = 173/223 (78%), Gaps = 4/223 (2%) Strand=Plus/Plus Query 26952 ACAATGGGAGTAACGCATGTGCAGCCTACAGTCACTAGCATCTTCTCTAGCCTAAATGAA 27011 |||||||| || ||||| |||||||| || | ||| ||||||||||| ||| || || Sbjct 109862 ACAATGGGGGTGACGCAGGTGCAGCCCACGGCCACCAGCATCTTCTCCAGCTGGAAGGAG 109921 Query 27012 TTAGGGCAGGGTT--GATGCCCTTTGCGCACCACTAGAATCTCTTGTTGGATAGGGACTG 27069 | |||||| | ||| ||| |||||| || || |||||||| ||||| ||||| | Sbjct 109922 TGGGGGCAGTTCTGAGATTCCC--TGCGCAGGACCAGGATCTCTTGCTGGATGGGGACGG 109979 Query 27070 AGTTCATGTGGTAGTCTACATTCCCATCAGCATTAACACATCCTAAGTAGCGACACTTTG 27129 ||||||||||| ||||||| ||||| || ||||| ||||| || | || ||| ||||| | Sbjct 109980 AGTTCATGTGGAAGTCTACCTTCCCTTCGGCATTGACACAGCCCAGGTGGCGGCACTTCG 110039 Query 27130 CTTCCCAAATCACAGAGGGATATCTATCTTGATCTTCATTGCG 27172 | ||||| ||||||||||| ||||| || | || || ||||| Sbjct 110040 CCTCCCAGATCACAGAGGGGTATCTCTCAGGGTCCTCGTTGCG 110082 >seq2547 Length=271193 Score = 123 bits (136), Expect = 2e-23 Identities = 103/126 (82%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 4165 TTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTTTATTTGCTAATTCTGGC 4224 ||||| |||||||| ||||| | |||||| |||||||| |||||||||||||||||||| Sbjct 269862 TTATAAACAGAACTGCCTCCCACTATCCAAACCATGTCCACTTTATTTGCTAATTCTGGT 269921 Query 4225 TGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAAAAATGAGCTCTATGTGGA 4284 || || |||| ||| |||||||| ||||| || || | ||||||||||| |||||| Sbjct 269922 TGCTCAAGAAGTGATAAGGCATCATCCAAACTTTTGGCAAGAAAATGAGCTCCTTGTGGA 269981 Query 4285 AGCTCC 4290 | ||| Sbjct 269982 GGTTCC 269987 Score = 114 bits (126), Expect = 9e-21 Identities = 92/111 (83%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 4056 AAGTTTGTATTTCTCTAGATCAAATTCTGGAAAAAAGGTGTCACATTCAAAGTCTTGCAT 4115 |||||| ||||| || | ||||| |||||||||||| ||||||| |||||| || ||||| Sbjct 267539 AAGTTTATATTTTTCAAAATCAATTTCTGGAAAAAATGTGTCACTTTCAAATTCCTGCAT 267598 Query 4116 GATCCTAGTCACAAACAGTTTAAGATCGCATGGATAACTCATAGCTTCTTT 4166 |||||| |||||||||||| |||||| || ||| | |||| ||||| || Sbjct 267599 GATCCTTGTCACAAACAGTCTAAGATGGCCTGGCTTGTTCATGGCTTCCTT 267649 Score = 91.5 bits (100), Expect = 1e-13 Identities = 68/80 (85%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 3968 ATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTCTCTTCTTGCACAT 4027 |||||| |||||| |||||||||||||||||||||||||| | ||| || || || | || Sbjct 264285 ATTAATCATTCTTTTCATATACTTCAAATTTGTACTTAATGCCTTTTTCCTCCTGGATAT 264344 Query 4028 TAGAAAGAACACTTGGATAT 4047 ||||||||||| ||| ||| Sbjct 264345 CAGAAAGAACACCTGGGTAT 264364 >seq406 Length=971737 Score = 116 bits (128), Expect = 3e-21 Identities = 91/109 (83%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 4290 CTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGG 4349 ||| ||||| | |||||||| | |||||||||| | ||||| ||||| ||||||||||| Sbjct 7534 CTTGAGTTCTCTACTGAGAACTAAATTAATTCTGTCCTTTAACGGCCGATTCTTCTCAGG 7593 Query 4350 AATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTTATCT 4398 || |||||||| ||||| ||||||||||||| |||||||| ||| || Sbjct 7594 GATGGAGAACCAGGTCTTCCTACCCATAATCACCAAATTCTGCTTACCT 7642 >seq2188 Length=317451 Score = 82.4 bits (90), Expect = 6e-11 Identities = 96/130 (74%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 102033 CTTTATATTCTGCTCCGAAATGCCTCCACTGAAATCCATACACAGGTCCAAGATCTCCTT 102092 |||| |||||||| || ||||||||||||||||| || || || || || | ||| |||| Sbjct 252550 CTTTGTATTCTGCCCCAAAATGCCTCCACTGAAAGCCGTAAACTGGGCCTAAATCCCCTT 252491 Query 102093 CATCTCTGTCATAAAAACCAAGTTTATCTAAAAATGATCTAGATCCATTCGCATCCCAAA 102152 | |||||| | | || || || | || || || || || ||||| |||||||| | Sbjct 252490 CTTCTCTGGCGGAGAATCCCAGGCTGTCCAAGAAGTCTCGGGACCCATTGGCATCCCAGA 252431 Query 102153 TGTGCACGCC 102162 | | ||| || Sbjct 252430 TTTTCACTCC 252421 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361017427236347