Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Equus_20przewalskii_20[refseq_20GCF_5F000696695.1_202014-06-05]
53,097 sequences; 2,395,954,271 total letters
Query= NC_001350.1
Length=112930
Score E
Sequences producing significant alignments: (Bits) Value
seq2359 421 5e-113
seq543 172 4e-38
seq2547 123 2e-23
seq406 116 3e-21
seq2188 82.4 6e-11
>seq2359
Length=294480
Score = 421 bits (466), Expect = 5e-113
Identities = 439/578 (76%), Gaps = 16/578 (3%)
Strand=Plus/Minus
Query 3955 AAAAGACATTTGTATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTC 4014
|||| || || |||||| |||||| ||||||||||||||||||||||||| | ||||
Sbjct 165504 AAAACACCTTCACATTAATCATTCTTTTCATATACTTCAAATTTGTACTTAAGGCCTTTC 165445
Query 4015 TCTTCTTGCACATTAGAAAGAACACTTGGATATTCTATCAAAAGTTTGTATTTCTCTAGA 4074
|| || || |||| ||||||||||| |||||||||| | |||||| ||||| | |
Sbjct 165444 TCCTCCTGGACATCAGAAAGAACACCTGGATATTCTGGGAGAAGTTT----TTCTCCAAA 165389
Query 4075 TCAAATTCTGGAAAAAAGGTGTCACATTCAAAGTCTTGCATGATCCTAGTCACAAACAGT 4134
||| |||||||||||| ||||||| |||||| || |||||| | || |||||||| |||
Sbjct 165388 TCAGTTTCTGGAAAAAATGTGTCACTTTCAAATTCCTGCATGCTACTTGTCACAAATAGT 165329
Query 4135 TTAAGATCGCATGGATAACTCATAGCTTCTTTATACACAGAACTACCTCCAATTATCCAG 4194
|||||| || ||| | || | ||||| ||||| |||||||| ||||| | ||||||
Sbjct 165328 CTAAGATGGCCTGGCTTGTTCCTTGCTTCCTTATAAACAGAACTGCCTCCCACTATCCAA 165269
Query 4195 ACCATGTCTACTTTATTTGCTAATTCTGGCTGTTCGGTAAGTTTTAAAGCATCATCTAAA 4254
|||||||| | |||||||| ||||||||| ||| | |||||| ||| |||||||| |||
Sbjct 165268 ACCATGTCCATTTTATTTGTTAATTCTGGTTGTGCAGTAAGTGTTAGGGCATCATCCAAA 165209
Query 4255 CTCTTAGCTAAAAAATGAGCTCTATGTGGAAGCTCCTTTAGTTCCTTGCTGAGAACAACA 4314
|| || | | ||||||||||| |||||| | | ||| ||||| | |||||||| | |
Sbjct 165208 CTTTTGGGAAGAAAATGAGCTCCTTGTGGACGTTACTTGAGTTCTCTACTGAGAACTAAA 165149
Query 4315 TTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGGAATTGAGAACCAAGTCTTTTTACCC 4374
||| ||||| | |||||||| || |||| |||||||| |||||| ||||| |||||
Sbjct 165148 TTATTTCTGTCCTTTAAAGGTCGAATCTTTTCAGGAATGGAGAACGGGGTCTTCCTACCC 165089
Query 4375 ATAATCACTAAATTCTGTTTATCTGGTACAGAAGATGTAGTAGTCATTCTTTGG------ 4428
|||||||| |||||||||||| || || ||||| || || ||||||||||||
Sbjct 165088 ATAATCACCAAATTCTGTTTACCTTCTAATGAAGAGGTTGTGGTCATTCTTTGGAACTAC 165029
Query 4429 ------AAATGTTTAAAATCATTCATAAGTCTTGGCCAAGGCAAGTTACCTTGTTTGCCA 4482
|| | || || || ||| | ||| | |||| ||||| || || | |||||
Sbjct 165028 GAATTCAACTACTTGAATTCGTTCCTGAGTGTGGGCCGAGGCAGGTCGCCCTTCTTGCCC 164969
Query 4483 ATGCCCATGTTTTGAGCTACAGCAACAATGCAGTTTAG 4520
|||||||| || || | || | |||| |||||||
Sbjct 164968 ATGCCCATATTCTGGGACACGACGACAACTTAGTTTAG 164931
>seq543
Length=843532
Score = 172 bits (190), Expect = 4e-38
Identities = 173/223 (78%), Gaps = 4/223 (2%)
Strand=Plus/Plus
Query 26952 ACAATGGGAGTAACGCATGTGCAGCCTACAGTCACTAGCATCTTCTCTAGCCTAAATGAA 27011
|||||||| || ||||| |||||||| || | ||| ||||||||||| ||| || ||
Sbjct 109862 ACAATGGGGGTGACGCAGGTGCAGCCCACGGCCACCAGCATCTTCTCCAGCTGGAAGGAG 109921
Query 27012 TTAGGGCAGGGTT--GATGCCCTTTGCGCACCACTAGAATCTCTTGTTGGATAGGGACTG 27069
| |||||| | ||| ||| |||||| || || |||||||| ||||| ||||| |
Sbjct 109922 TGGGGGCAGTTCTGAGATTCCC--TGCGCAGGACCAGGATCTCTTGCTGGATGGGGACGG 109979
Query 27070 AGTTCATGTGGTAGTCTACATTCCCATCAGCATTAACACATCCTAAGTAGCGACACTTTG 27129
||||||||||| ||||||| ||||| || ||||| ||||| || | || ||| ||||| |
Sbjct 109980 AGTTCATGTGGAAGTCTACCTTCCCTTCGGCATTGACACAGCCCAGGTGGCGGCACTTCG 110039
Query 27130 CTTCCCAAATCACAGAGGGATATCTATCTTGATCTTCATTGCG 27172
| ||||| ||||||||||| ||||| || | || || |||||
Sbjct 110040 CCTCCCAGATCACAGAGGGGTATCTCTCAGGGTCCTCGTTGCG 110082
>seq2547
Length=271193
Score = 123 bits (136), Expect = 2e-23
Identities = 103/126 (82%), Gaps = 0/126 (0%)
Strand=Plus/Plus
Query 4165 TTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTTTATTTGCTAATTCTGGC 4224
||||| |||||||| ||||| | |||||| |||||||| ||||||||||||||||||||
Sbjct 269862 TTATAAACAGAACTGCCTCCCACTATCCAAACCATGTCCACTTTATTTGCTAATTCTGGT 269921
Query 4225 TGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAAAAATGAGCTCTATGTGGA 4284
|| || |||| ||| |||||||| ||||| || || | ||||||||||| ||||||
Sbjct 269922 TGCTCAAGAAGTGATAAGGCATCATCCAAACTTTTGGCAAGAAAATGAGCTCCTTGTGGA 269981
Query 4285 AGCTCC 4290
| |||
Sbjct 269982 GGTTCC 269987
Score = 114 bits (126), Expect = 9e-21
Identities = 92/111 (83%), Gaps = 0/111 (0%)
Strand=Plus/Plus
Query 4056 AAGTTTGTATTTCTCTAGATCAAATTCTGGAAAAAAGGTGTCACATTCAAAGTCTTGCAT 4115
|||||| ||||| || | ||||| |||||||||||| ||||||| |||||| || |||||
Sbjct 267539 AAGTTTATATTTTTCAAAATCAATTTCTGGAAAAAATGTGTCACTTTCAAATTCCTGCAT 267598
Query 4116 GATCCTAGTCACAAACAGTTTAAGATCGCATGGATAACTCATAGCTTCTTT 4166
|||||| |||||||||||| |||||| || ||| | |||| ||||| ||
Sbjct 267599 GATCCTTGTCACAAACAGTCTAAGATGGCCTGGCTTGTTCATGGCTTCCTT 267649
Score = 91.5 bits (100), Expect = 1e-13
Identities = 68/80 (85%), Gaps = 0/80 (0%)
Strand=Plus/Plus
Query 3968 ATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTCTCTTCTTGCACAT 4027
|||||| |||||| |||||||||||||||||||||||||| | ||| || || || | ||
Sbjct 264285 ATTAATCATTCTTTTCATATACTTCAAATTTGTACTTAATGCCTTTTTCCTCCTGGATAT 264344
Query 4028 TAGAAAGAACACTTGGATAT 4047
||||||||||| ||| |||
Sbjct 264345 CAGAAAGAACACCTGGGTAT 264364
>seq406
Length=971737
Score = 116 bits (128), Expect = 3e-21
Identities = 91/109 (83%), Gaps = 0/109 (0%)
Strand=Plus/Plus
Query 4290 CTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGG 4349
||| ||||| | |||||||| | |||||||||| | ||||| ||||| |||||||||||
Sbjct 7534 CTTGAGTTCTCTACTGAGAACTAAATTAATTCTGTCCTTTAACGGCCGATTCTTCTCAGG 7593
Query 4350 AATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTTATCT 4398
|| |||||||| ||||| ||||||||||||| |||||||| ||| ||
Sbjct 7594 GATGGAGAACCAGGTCTTCCTACCCATAATCACCAAATTCTGCTTACCT 7642
>seq2188
Length=317451
Score = 82.4 bits (90), Expect = 6e-11
Identities = 96/130 (74%), Gaps = 0/130 (0%)
Strand=Plus/Minus
Query 102033 CTTTATATTCTGCTCCGAAATGCCTCCACTGAAATCCATACACAGGTCCAAGATCTCCTT 102092
|||| |||||||| || ||||||||||||||||| || || || || || | ||| ||||
Sbjct 252550 CTTTGTATTCTGCCCCAAAATGCCTCCACTGAAAGCCGTAAACTGGGCCTAAATCCCCTT 252491
Query 102093 CATCTCTGTCATAAAAACCAAGTTTATCTAAAAATGATCTAGATCCATTCGCATCCCAAA 102152
| |||||| | | || || || | || || || || || ||||| |||||||| |
Sbjct 252490 CTTCTCTGGCGGAGAATCCCAGGCTGTCCAAGAAGTCTCGGGACCCATTGGCATCCCAGA 252431
Query 102153 TGTGCACGCC 102162
| | ||| ||
Sbjct 252430 TTTTCACTCC 252421
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 361017427236347
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |