Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Equus_20przewalskii_20[refseq_20GCF_5F000696695.1_202014-06-05] 53,097 sequences; 2,395,954,271 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq1685 134 2e-26 seq3012 111 2e-19 seq98 107 2e-18 >seq1685 Length=395008 Score = 134 bits (148), Expect = 2e-26 Identities = 112/137 (82%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 53150 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 53209 || ||||||||||| ||||| ||||| |||||||| || || |||||||| ||||| | Sbjct 383076 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTGCTGGTATAAGGTTCAATG 383017 Query 53210 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 53269 |||||||||||||||| ||| ||||||||||| ||||| ||||| || || | | |||| Sbjct 383016 GACTCATTATTTCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAA 382957 Query 53270 CTATTTCTAAGACCGTA 53286 || ||||| | ||| || Sbjct 382956 CTGTTTCTTACACCATA 382940 Score = 100 bits (110), Expect = 3e-16 Identities = 103/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 54025 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 54084 || |||||||||||| |||||||| ||||||||||| || | || || || |||| | Sbjct 373329 CTCCACTCGTTTCATGAAGAGATCCGGAATCCAAAGGGCAAAGAAAAGGTCCCTGGCACG 373270 Query 54085 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 54144 || || || |||||||| ||||| || | |||||||||| | | || || ||||||| Sbjct 373269 CTGCTCTTCCTTTCCTGTGTTCTTCTTTAAATCGAGGAACTCAAAGATGTCTAAATGCCA 373210 Query 54145 CGGTTCCAAGTATAT 54159 || |||| ||| || Sbjct 373209 AGGCTCCAGGTAAAT 373195 Score = 100 bits (110), Expect = 3e-16 Identities = 136/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 53388 CATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGT 53447 |||| || || ||||| || |||| || | || ||||| || || || || || || | Sbjct 378220 CATAGGTTTCATATGGGCCATCCTCCTTGGACAGGTCACAGCTGGCTTCCAAGGCTCCAT 378161 Query 53448 AATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGAT 53507 ||||||||||||| ||||| | |||||| || || || || | || ||||| |||| Sbjct 378160 AATAAATGGTTTCAAAGATTTGCTTATTCAGTAACTGGGCCTCTGGACTCTCAAAAGGAT 378101 Query 53508 AATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 53567 | | | |||||||| || ||||| | ||||| || ||||| || || || | ||| | Sbjct 378100 ACCTCATCAGAATAAAAGCATCTGCCAGACCTTGTACCCCAATCCCAATGGGGCGATGGC 378041 Query 53568 TCTTATTAGA 53577 ||||| || Sbjct 378040 GTTTATTTGA 378031 Score = 93.3 bits (102), Expect = 5e-14 Identities = 120/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 54768 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 54827 |||| || | ||| |||||||||||||| | ||| || || || || || || || || | Sbjct 361307 CACTGAACACTTTCTTTGTTTCTTTGTGCAAATTAGAGACAGCAATCCTTGCTGCCAGGA 361248 Query 54828 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCA 54887 | ||||| || || || | ||||| | || || ||| |||| || | || ||| || | Sbjct 361247 TAGCATAGTCAGGGTGCTTAGTAGTCAAGGTCGCAGCTGTTTCAGCAGCCAAAGTATCTA 361188 Query 54888 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 54933 ||| || || || || ||| | |||| |||||||| || ||||| Sbjct 361187 GTTCCACGGTAGTGACCCCACTGTATAAGCCTTGGATTACTTTCAT 361142 Score = 82.4 bits (90), Expect = 9e-11 Identities = 109/151 (72%), Gaps = 3/151 (2%) Strand=Plus/Minus Query 53588 TCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGGTTTCTGACAATTACTTTG 53647 ||||| ||||| || || |||||||| ||||||||||| | ||||| |||||| |||||| Sbjct 377813 TCTGGGATAGGGTAGTAGTTAATATCAATAATTTTATTCAAGTTTCGGACAATGACTTTG 377754 Query 53648 ACCACATCCTTCAGTTTGAGAAAATCAAAT---TGTCCATCTATTACAAACATGTTCAAT 53704 || || || || |||| ||| || ||| | | | |||||||| ||||| Sbjct 377753 GTGACTTCAGCCAACTTCTGAAAGTCATATGTGTGTTCTGATGTGACAAACATATTCAAG 377694 Query 53705 GCAATAGATGCCAGATTACAAACGGCTACCT 53735 || | || |||| ||||| || || |||| Sbjct 377693 GCCAGGGAAGCCAAGTTACAGACTGCAACCT 377663 >seq3012 Length=223438 Score = 111 bits (122), Expect = 2e-19 Identities = 384/588 (65%), Gaps = 16/588 (3%) Strand=Plus/Plus Query 24122 TTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTT 24181 |||||| || | || || || || ||||||| ||| || |||| | | |||||| || Sbjct 75855 TTTAAATATTAGGCAGGCAAAGTCACAGTGTAAACC-TCA-CTCTGCCCAGTAATTCATT 75912 Query 24182 GGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGA 24241 |||||| |||| |||||| || | || || || | ||| || || | Sbjct 75913 GGAAAATGTGATCGTAGGCATTGATCCTCATTTCTTGAGGTAGAATGCTAGCGTGAAAG- 75971 Query 24242 TCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGC 24301 ||| | ||| ||||| | |||||| ||||| | | | || |||||| ||| | Sbjct 75972 --CAGCAGAGAT--TTCCTCC-ACTGCCCCAAAGCCTACCACTCATTCTCCGTAA--GTT 76024 Query 24302 GCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTC 24361 ||| || | | ||| | | |||| || ||||||| | |||||| ||||||| || Sbjct 76025 GCT-TCTT-TGTCCCCAGTCAGGCCCTGTCAGCCTTCTCT---ACACAAAGCATTGTTTC 76079 Query 24362 TATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAG 24421 |||||||| |||| | || | || || | |||||||| | || |||| | || Sbjct 76080 AATAGCATTGAAGACAAAGGCCTCCTCTTTGCAATCTTTAATGCAAGTGTCAACAAGGAG 76139 Query 24422 ACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGC 24481 ||| || ||||| |||| | ||| || ||| | |||||| || ||||||| | || Sbjct 76140 ACTCTATATTTCAGAATATAAGTTGTCCATGTCACCTTGAAAGCCACAGAAACACATTGC 76199 Query 24482 CTCGGTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTC 24541 || ||||||||||||| | || |||| | | | |||||| | ||| || Sbjct 76200 TTCTGTAATCTGTACTTTTGGACGAAATTGCAGCACCAGGCTTTCATATCCAGCTCCATC 76259 Query 24542 ACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTT 24601 ||| ||||||| || |||| | | || ||||| | | || | || | || Sbjct 76260 ACTTGCTGCAACGAAAGCCAGAGCCCGAGATACAAAATCTCTCTCCACAGGCTTCAG-GG 76318 Query 24602 ATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTC 24661 ||||| | | || || || || ||| || || || |||||||||| || ||||| Sbjct 76319 CTTCCAGTGCTGAATGTCCTTGGAGTGATCTACCTCCTCAGCTGTCCAAAAGGAAGCCTC 76378 Query 24662 TGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAAT 24709 || || | | ||| | ||| ||| || |||||| | |||||||| Sbjct 76379 AGCTTTCTGGTCCATCTGCCAAATGCCACGATATTCGAGAGGAAAAAT 76426 >seq98 Length=1799927 Score = 107 bits (118), Expect = 2e-18 Identities = 95/119 (80%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 24159 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 24218 || ||||| || || | ||| |||||||| |||||||| ||||| || || | || || Sbjct 807443 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATAAGACCTCTTTTCTTT 807502 Query 24219 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGC 24277 ||||| ||||| | ||||| ||||| || ||||||||||||||||| || |||||||| Sbjct 807503 AGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGGC 807561 Score = 98.7 bits (108), Expect = 1e-15 Identities = 87/109 (80%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 24519 AAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAA 24578 |||||||||||||| ||||| ||||||||||||||||| || || ||||| |||||| Sbjct 813836 AAATTTTCATTCACAATTCCATCACTGGCTGCAAAAAAGGCTAAGACATGAGAGATAAAA 813895 Query 24579 TATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATA 24627 || || || |||| ||| || || ||||||| | || ||| || |||| Sbjct 813896 TACTTCTCATCTGATGTAAGCTTGTTCCAATGAGGGAGATCCTTGGATA 813944 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593327539552560