Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Equus_20przewalskii_20[refseq_20GCF_5F000696695.1_202014-06-05] 53,097 sequences; 2,395,954,271 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq1074 479 3e-130 seq2188 194 2e-44 seq5617 183 4e-41 >seq1074 Length=565731 Score = 479 bits (530), Expect = 3e-130 Identities = 674/941 (72%), Gaps = 9/941 (1%) Strand=Plus/Plus Query 9427 CCATGTTACAAAAGTGACACTACGAGACTAGCAGCTCAGGTGGTACCCGCCCTGTATCTG 9486 |||||| | |||| ||| | || || || || ||| | | ||| | |||||| Sbjct 478294 CCATGTGAAAAAATCAACATCAAGATGCTGGCGGCCCAGTTCCTGCCCCCACTGTATTCT 478353 Query 9487 CTTGTGTTTCTCTTTGGGTTGTTGGGCAATATCTTAGTGGTGATTATTGTCATAAGATAC 9546 || ||| | | |||| || |||||||| | | |||||| | || ||| || |||| Sbjct 478354 CTGGTGGTCGTGATTGGTCTGCTGGGCAATCTGATGGTGGTGGTGATCCTCACAAAATAC 478413 Query 9547 ATGAAGATCAAAAACCTCACTAACATGTTACTGTTAAACTTGGCAATATCTGACTTGCTA 9606 | || | || | | || ||||| || ||||| || |||||||| ||||||||||| Sbjct 478414 AAGAGGCTCCGGATTATGACCAACATCTTCCTGTTCAATTTGGCAATTTCTGACTTGCTC 478473 Query 9607 TTTCTTTTAACTTTGCCATTTTGGATGCACTATATTGGAATGTATCATGATTGGACTTTT 9666 |||||||| ||| ||||||| ||||| |||||| || | | || || ||| |||| Sbjct 478474 TTTCTTTTCACTCTGCCATTCTGGATTCACTATGTTTGGCGGGAT---GAGTGGGTTTTT 478530 Query 9667 GGTATTTCCCTGTGTAAACTGCTCAGGGGTGTGTGTTACATGTCACTGTACAGCCAGGTC 9726 || | | ||||||| | |||| || | ||||||| | |||||||| || || Sbjct 478531 GGCCATCACATGTGTAAGTTCCTCATTGGGCTTTGTTACACGGGCTTGTACAGCGAGATC 478590 Query 9727 TTTTGCATCATCCTGCTAACAGTAGACAGGTATCTAGCTGTTGTCTATGCTGTAACTGCT 9786 |||| |||||||||| | || ||||| ||||||| || | ||| | ||||| ||| Sbjct 478591 TTTTTCATCATCCTGTTGACGCTAGACCGGTATCTGGCCATCGTCCACGCTGTGTTTGCC 478650 Query 9787 TTGAGGTTTAGAACAGTAACCTGTGGCATAGTTACCTGTGTATGTACCTGGTTTCTGGCA 9846 | | | || || || | |||||| | ||| |||| | |||||| |||||| Sbjct 478651 CTTCGAACCCGGACCGTCACTTTTGGCATCATAACCAGTGTCTTCACCTGGGGCCTGGCA 478710 Query 9847 GGGTTGTTGTCCCTCCCTGAATTTTTCTTTCATGGACACCAAGATGACAATGGTAGGGTT 9906 ||| | |||||||||||||| |||| ||||| |||||| || |||| | | Sbjct 478711 GGGCTAGCAGCCCTCCCTGAATTTATCTTCCATGGGTTCCAAGAGGAATTTGGTCAGTAT 478770 Query 9907 CAGTGTGATCCTTACTACCCAGAGATGTCTACAAATGTTTGGAGGCGCGCCCACGTTGCA 9966 || ||||| ||||||||| | |||| | |||| | | |||| ||| Sbjct 478771 GTCTGCCTTCCTTTCTACCCAGAAGCAGCAGAAAATATCTGGAAGAGTACCCATGTTCTG 478830 Query 9967 AAGGTGATTATGTTAAGTCTCATTTTGCCTCTGCTCATTATGGCTGTCTGCTACTATGTA 10026 | ||| ||| || |||||| | ||||| |||||||||||||||||||||||| | | Sbjct 478831 AGAATGAATATCTTGAGTCTCGCTCTGCCTTTGCTCATTATGGCTGTCTGCTACTCAGGA 478890 Query 10027 ATTATCAGAAGACTGTTGAGGCGCCCCAGCAAGAAGAAGTACAAGGCCATCAGGCTCATC 10086 || || | || |||| |||| |||| | |||||| ||||||||||||||| ||||||| Sbjct 478891 ATCATTAAAACACTGCTGAGATGCCCTAACAAGAAAAAGTACAAGGCCATCCGGCTCATT 478950 Query 10087 TTTGTCATCATGGTGGCCTATTTTGTTTTTTGGACACCCTACAACATTGTTCTCCTACTG 10146 |||||||||||||||| || ||| ||||| ||| |||| |||||| | |||||| | | Sbjct 478951 TTTGTCATCATGGTGGTCTTTTTCGTTTTCTGGGCACCTTACAACCTGGTTCTCTTTTTC 479010 Query 10147 TCTACCTTTCACGCAACCCTTCTT--AACCTGCAGTGTGCATTGAGCAGTAACTTGGACA 10204 || || ||||| ||||| | ||| ||| || ||| || ||||| | |||||| Sbjct 479011 TCCACTTTTCAAACAACCTTCCTTGGGACCAGCTGTGATCA--GAGCAAACAGCTGGACA 479068 Query 10205 TGGCTCTGCTGATAACAAAAACAGTAGCCTACACACACTGTTGCATCAACCCAGTGATCT 10264 |||| |||||| | ||| | | | |||||||| ||||| || ||||||| ||||||| Sbjct 479069 TGGCCCTGCTGGTGACAGAGATGATCGCCTACACGCACTGCTGTGTCAACCCTGTGATCT 479128 Query 10265 ACGCGTTCGTGGGGGAGAAGTT-TAGAAGACACCTGTACCACTTCTTCCACACCTACGTG 10323 |||| || || || |||| ||| |||||| |||| ||||||| |||||||| |||||| Sbjct 479129 ACGCATTTGTTGGCGAGAGGTTCCAGAAGA-ACCTCCACCACTTTTTCCACACGTACGTG 479187 Query 10324 GCCATCTACCTCTGCAAGTACATCCCCTTCCTGTCTGGTGA 10364 ||||||||||| ||||| |||||||| ||||| || |||| Sbjct 479188 GCCATCTACCTGTGCAAATACATCCCATTCCTTCCTAGTGA 479228 Score = 479 bits (530), Expect = 3e-130 Identities = 674/941 (72%), Gaps = 9/941 (1%) Strand=Plus/Plus Query 176313 CCATGTTACAAAAGTGACACTACGAGACTAGCAGCTCAGGTGGTACCCGCCCTGTATCTG 176372 |||||| | |||| ||| | || || || || ||| | | ||| | |||||| Sbjct 478294 CCATGTGAAAAAATCAACATCAAGATGCTGGCGGCCCAGTTCCTGCCCCCACTGTATTCT 478353 Query 176373 CTTGTGTTTCTCTTTGGGTTGTTGGGCAATATCTTAGTGGTGATTATTGTCATAAGATAC 176432 || ||| | | |||| || |||||||| | | |||||| | || ||| || |||| Sbjct 478354 CTGGTGGTCGTGATTGGTCTGCTGGGCAATCTGATGGTGGTGGTGATCCTCACAAAATAC 478413 Query 176433 ATGAAGATCAAAAACCTCACTAACATGTTACTGTTAAACTTGGCAATATCTGACTTGCTA 176492 | || | || | | || ||||| || ||||| || |||||||| ||||||||||| Sbjct 478414 AAGAGGCTCCGGATTATGACCAACATCTTCCTGTTCAATTTGGCAATTTCTGACTTGCTC 478473 Query 176493 TTTCTTTTAACTTTGCCATTTTGGATGCACTATATTGGAATGTATCATGATTGGACTTTT 176552 |||||||| ||| ||||||| ||||| |||||| || | | || || ||| |||| Sbjct 478474 TTTCTTTTCACTCTGCCATTCTGGATTCACTATGTTTGGCGGGAT---GAGTGGGTTTTT 478530 Query 176553 GGTATTTCCCTGTGTAAACTGCTCAGGGGTGTGTGTTACATGTCACTGTACAGCCAGGTC 176612 || | | ||||||| | |||| || | ||||||| | |||||||| || || Sbjct 478531 GGCCATCACATGTGTAAGTTCCTCATTGGGCTTTGTTACACGGGCTTGTACAGCGAGATC 478590 Query 176613 TTTTGCATCATCCTGCTAACAGTAGACAGGTATCTAGCTGTTGTCTATGCTGTAACTGCT 176672 |||| |||||||||| | || ||||| ||||||| || | ||| | ||||| ||| Sbjct 478591 TTTTTCATCATCCTGTTGACGCTAGACCGGTATCTGGCCATCGTCCACGCTGTGTTTGCC 478650 Query 176673 TTGAGGTTTAGAACAGTAACCTGTGGCATAGTTACCTGTGTATGTACCTGGTTTCTGGCA 176732 | | | || || || | |||||| | ||| |||| | |||||| |||||| Sbjct 478651 CTTCGAACCCGGACCGTCACTTTTGGCATCATAACCAGTGTCTTCACCTGGGGCCTGGCA 478710 Query 176733 GGGTTGTTGTCCCTCCCTGAATTTTTCTTTCATGGACACCAAGATGACAATGGTAGGGTT 176792 ||| | |||||||||||||| |||| ||||| |||||| || |||| | | Sbjct 478711 GGGCTAGCAGCCCTCCCTGAATTTATCTTCCATGGGTTCCAAGAGGAATTTGGTCAGTAT 478770 Query 176793 CAGTGTGATCCTTACTACCCAGAGATGTCTACAAATGTTTGGAGGCGCGCCCACGTTGCA 176852 || ||||| ||||||||| | |||| | |||| | | |||| ||| Sbjct 478771 GTCTGCCTTCCTTTCTACCCAGAAGCAGCAGAAAATATCTGGAAGAGTACCCATGTTCTG 478830 Query 176853 AAGGTGATTATGTTAAGTCTCATTTTGCCTCTGCTCATTATGGCTGTCTGCTACTATGTA 176912 | ||| ||| || |||||| | ||||| |||||||||||||||||||||||| | | Sbjct 478831 AGAATGAATATCTTGAGTCTCGCTCTGCCTTTGCTCATTATGGCTGTCTGCTACTCAGGA 478890 Query 176913 ATTATCAGAAGACTGTTGAGGCGCCCCAGCAAGAAGAAGTACAAGGCCATCAGGCTCATC 176972 || || | || |||| |||| |||| | |||||| ||||||||||||||| ||||||| Sbjct 478891 ATCATTAAAACACTGCTGAGATGCCCTAACAAGAAAAAGTACAAGGCCATCCGGCTCATT 478950 Query 176973 TTTGTCATCATGGTGGCCTATTTTGTTTTTTGGACACCCTACAACATTGTTCTCCTACTG 177032 |||||||||||||||| || ||| ||||| ||| |||| |||||| | |||||| | | Sbjct 478951 TTTGTCATCATGGTGGTCTTTTTCGTTTTCTGGGCACCTTACAACCTGGTTCTCTTTTTC 479010 Query 177033 TCTACCTTTCACGCAACCCTTCTT--AACCTGCAGTGTGCATTGAGCAGTAACTTGGACA 177090 || || ||||| ||||| | ||| ||| || ||| || ||||| | |||||| Sbjct 479011 TCCACTTTTCAAACAACCTTCCTTGGGACCAGCTGTGATCA--GAGCAAACAGCTGGACA 479068 Query 177091 TGGCTCTGCTGATAACAAAAACAGTAGCCTACACACACTGTTGCATCAACCCAGTGATCT 177150 |||| |||||| | ||| | | | |||||||| ||||| || ||||||| ||||||| Sbjct 479069 TGGCCCTGCTGGTGACAGAGATGATCGCCTACACGCACTGCTGTGTCAACCCTGTGATCT 479128 Query 177151 ACGCGTTCGTGGGGGAGAAGTT-TAGAAGACACCTGTACCACTTCTTCCACACCTACGTG 177209 |||| || || || |||| ||| |||||| |||| ||||||| |||||||| |||||| Sbjct 479129 ACGCATTTGTTGGCGAGAGGTTCCAGAAGA-ACCTCCACCACTTTTTCCACACGTACGTG 479187 Query 177210 GCCATCTACCTCTGCAAGTACATCCCCTTCCTGTCTGGTGA 177250 ||||||||||| ||||| |||||||| ||||| || |||| Sbjct 479188 GCCATCTACCTGTGCAAATACATCCCATTCCTTCCTAGTGA 479228 >seq2188 Length=317451 Score = 194 bits (214), Expect = 2e-44 Identities = 140/162 (86%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 145750 AGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGC 145809 |||||||||| ||| |||| ||||||||| ||||||| ||||||||| |||||||||||| Sbjct 256322 AGGCCCGTGATGTGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCAATGTTGAAGGGC 256263 Query 145810 ACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCGCCCGCC 145869 || ||||| |||||||| ||||| | |||||||||||||||||| ||||| ||| | || Sbjct 256262 ACACCCAGGCCCATGTCTCCCGATCTCTGGTACAGCTGGCAGGACAGCTCACCGTTCACC 256203 Query 145870 ACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCATG 145911 |||||||||||||| ||| |||||||| ||||| |||||| Sbjct 256202 ACGTAGAACTGGCAGAGGGCATGGCAGGGAGGCAGAGCCATG 256161 >seq5617 Length=80173 Score = 183 bits (202), Expect = 4e-41 Identities = 135/157 (86%), Gaps = 3/157 (2%) Strand=Plus/Plus Query 138082 CAGCGCCTCAGCCTCACCCTGAGGGTTTTGAGCTTTTCCCCCAGGGAGTTCACTTTATCC 138141 ||||||| ||||||||| | |||||| || ||||||||||||||||||||||| | ||| Sbjct 30385 CAGCGCCGCAGCCTCACTCGGAGGGTCTTCAGCTTTTCCCCCAGGGAGTTCACGTGCTCC 30444 Query 138142 TTTTCCTGGTCGGTGCTGTGGTTCTCGGCCTGGGGCATCACCTCCTCCAGGTAAAACTGG 138201 || ||| | || ||||||||| ||||||||||||||||||||||||||||||||| Sbjct 30445 TTGAT---GTCTGGGCCGTGGTTCTCAGCCTGGGGCATCACCTCCTCCAGGTAAAACTGG 30501 Query 138202 ATCATCTCAGACAGGGCCTGGCAGCCCAGGTAACCCT 138238 |||||||| |||| ||| ||||| ||||||||||||| Sbjct 30502 ATCATCTCCGACAAGGCTTGGCAACCCAGGTAACCCT 30538 Score = 131 bits (144), Expect = 2e-25 Identities = 139/180 (77%), Gaps = 4/180 (2%) Strand=Plus/Plus Query 138297 AAAGAAGGTCTTTACCCTGCTGAAGGCGGCCCTGAGCTCGTGGAGCATGTGGGGCAGGCT 138356 |||||| ||||| ||||||||||||||||| | |||||| |||||||||||||||||||| Sbjct 31714 AAAGAAAGTCTTCACCCTGCTGAAGGCGGCTCGGAGCTCATGGAGCATGTGGGGCAGGCT 31773 Query 138357 GGTGGGCAATGTAGG-GCAGTCGTCCCCAGACTCACTGTCATATTTGTTGTCGGCCCACA 138415 ||| || || || || |||| || | |||||| || | | | ||| | || Sbjct 31774 GGTTGGGAA-GTGGGTGCAGCTGTTCTCAGACTGGGTGCCCCGGTCTCGGCTGGCTCCCA 31832 Query 138416 CCCCGGCCAGGAGAACCAGGCAACACAGCAGCGATGCCCTGAACATGGCTAA--TCTGCC 138473 |||||||||||| ||||||||||| ||||| | ||| ||| ||||||| | |||||| Sbjct 31833 CCCCGGCCAGGAAGACCAGGCAACATAGCAGTGCTGCGCTGGGCATGGCTGAGCTCTGCC 31892 Score = 127 bits (140), Expect = 2e-24 Identities = 85/95 (89%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 137922 TCAGTTTTTCATCTTTGTGGTCATGTAGGCCTCTATGTAGTTAATGAAGATGTCAAACTC 137981 ||||||||||||||| || ||||| ||||| ||||||||||| ||||||||||||||||| Sbjct 28083 TCAGTTTTTCATCTTCGTTGTCATATAGGCTTCTATGTAGTTGATGAAGATGTCAAACTC 28142 Query 137982 GCTCATGGCCTTGTAGACCCCTTTTTCCTGGAGCT 138016 |||||||| |||||||| ||||| || ||||||| Sbjct 28143 ACTCATGGCTTTGTAGACACCTTTCTCTTGGAGCT 28177 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/71 (90%), Gaps = 3/71 (4%) Strand=Plus/Plus Query 138236 CCTTAAAGTCTTCCAGCAGGGACCCGTCCAGCAACATGTTGTCCAGCTGGTCCTTCAT-- 138293 |||||||||| |||||||||||||||| || ||||||||||||||||||||||||||| Sbjct 30832 CCTTAAAGTCCTCCAGCAGGGACCCGTTCAACAACATGTTGTCCAGCTGGTCCTTCATTT 30891 Query 138294 -CTGAAAGAAG 138303 ||| |||||| Sbjct 30892 GCTGTAAGAAG 30902 Score = 86.0 bits (94), Expect = 7e-12 Identities = 56/62 (90%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 138015 CTTGCTGAAGGCGCTCTTCACCTGCTCCACGGCCTTGCTCTTATTCTCGCAGGGCAGGAA 138074 ||| |||||||| ||||||||||||||||| |||||||||||||| || |||||||| || Sbjct 29270 CTTACTGAAGGCACTCTTCACCTGCTCCACTGCCTTGCTCTTATTTTCACAGGGCAGAAA 29329 Query 138075 TC 138076 || Sbjct 29330 TC 29331 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589685158651880