Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Equus_20przewalskii_20[refseq_20GCF_5F000696695.1_202014-06-05] 53,097 sequences; 2,395,954,271 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq830 295 8e-75 seq3811 246 4e-60 seq2267 163 3e-35 seq343 159 4e-34 seq1105 134 2e-26 seq32 114 2e-20 >seq830 Length=664950 Score = 295 bits (326), Expect = 8e-75 Identities = 268/338 (79%), Gaps = 0/338 (0%) Strand=Plus/Plus Query 83057 AGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGC 83116 |||||||| |||||||||||||| | | | ||| | ||||| |||||||||||||| Sbjct 321056 AGCAGGGCTTCGATGTCGGGCTCAATATCGATGGTTGGAAAGCGGCGGCTGTACCTGCGC 321115 Query 83117 ACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGG 83176 || ||| ||||| | ||||||| |||||||||||||||||||| || ||||||||| Sbjct 321116 ACAGGCACACCGTCCGGGCCCACCAGAAACTTCTCGAAGTTCCAGGCGACATCGTTGCGG 321175 Query 83177 CACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTA 83236 |||||||||||||||| |||| || |||||| ||| ||||| | |||||| || Sbjct 321176 CACACTGGAGACCAGGTGATGAACTTAGGGTCGGTCATGAGCGCAGTGGCGTCGTCACTG 321235 Query 83237 GGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACC 83296 || || ||||| ||||| || ||||||||||||||||| || ||| ||||| || ||| Sbjct 321236 GGGGCAGGCAGAGCCTCCCGCAGGAAGGCGAAGAGCGGGTGCGCCTGCGCACCATTCACC 321295 Query 83297 TCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTC 83356 ||||||||||| ||||| | ||||| |||||||| ||| ||||| ||||||| ||| Sbjct 321296 TCGCACTTCTCAAAGAGTGTGAAGTTGGGCTCGAACCCGCCGCCAGGTCGGACGTACTTG 321355 Query 83357 AGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTG 83394 |||||| || |||||| | |||| |||||| ||||| Sbjct 321356 AGGGAATTCAGGATCTCTTCGTTCTTGGCGTTCTCCTG 321393 Score = 172 bits (190), Expect = 7e-38 Identities = 154/193 (80%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 83391 CCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGC 83450 |||| || ||||||||||| |||||||| || ||||| ||||| || || | || |||| Sbjct 321666 CCTGATGCCCGAACTGGTTGCACGGGAAGCCGAGCACGACCAGGCCGCGGGGCCCAAGGC 321725 Query 83451 GCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCTA 83510 |||||||||||||||||||||| ||||| ||||||||||| | |||||||| ||||||| Sbjct 321726 GCCGCTGCAGCTCGTTCATCTGGGTGTAGTCCCGGACCGTTGTGCCTCAGAGCGACGCTA 321785 Query 83511 CGTTCTCGATGAGCAAGACCCGGCCCCGTAAGAAGCCTAAGCTCACAGGTTCTCCTCCGG 83570 | ||||| ||||||| ||| ||| || | | |||| | ||||| || || || |||| Sbjct 321786 CATTCTCAATGAGCAGCACCTTGCCACGCAGGGAGCCCAGGCTCAAGGGCTCCCCGCCGG 321845 Query 83571 TAATCGGGCGTGC 83583 | |||||| || Sbjct 321846 CCAGCGGGCGCGC 321858 >seq3811 Length=162353 Score = 246 bits (272), Expect = 4e-60 Identities = 364/511 (71%), Gaps = 30/511 (6%) Strand=Plus/Plus Query 83105 CTGTACCTGCGCACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCC 83164 || ||||||||||||||| ||||| ||||||| ||||||||||||||||||||| Sbjct 156065 CTCTACCTGCGCACGGGCACACCGTCCAGGCCCACCAGGAACTTCTCGAAGTTCCAGGCG 156124 Query 83165 ACGTCGTTGCGGCACACTGGAGACCAGGCAATGAGC-TGGGGGTCGCTCACGAGCGTGCT 83223 ||||||| |||| |||| ||| |||||| |||| | |||||||| || |||||| | | Sbjct 156125 ACGTCGTCGCGGTACACGGGAAACCAGGTGATGAACGCGGGGGTCGGTCGCGAGCGCGGT 156184 Query 83224 CATGTCGTCGCTAGG-CGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCC 83282 ||| || | || ||| ||||| ||||| || |||| |||||||||| | || ||| Sbjct 156185 GGCGTCTTCACGGGGTCGCGGGCAGAGCCTCCCGCAGGAGGGCGAAGAGCCGGTGCGCCT 156244 Query 83283 TTGCACCGTTGACCTCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAG 83342 || ||||| |||||| |||||| ||| | | ||||| | || ||| ||| || | Sbjct 156245 GCGCGCCGTTCTCCTCGCGCTTCTCCAAGTGAGTGAAGTTGGCCTGGAACCCGCCGCCGG 156304 Query 83343 GACGGACGTGCTTCAGGGAAGGCAAGATCTCGGCATTCTGGGC----------------- 83385 | |||| || || |||||| || ||||| | | || ||| Sbjct 156305 GTCGGAAGTACTGGAGGGAATTCAGGATCTTTTCGTGCTTGGCCGGATGCCAAGACCAGG 156364 Query 83386 --GTTTTCCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCT 83443 ||| ||||| | | ||||||||| ||| |||| || ||||| ||||| ||| | || Sbjct 156365 ATGTTCTCCTGAGGCCGGAACTGGTTGCAC-GGAAGCCGAGCACGACCAGGCCCTG-GC- 156421 Query 83444 CCTAGGCGCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGG 83503 || ||||||||||||||| |||||| ||| ||||| || ||||||| | ||||| || Sbjct 156422 CCGAGGCGCCGCTGCAGCCCGTTCACCTGGGTGTAGCCCTGGACCGTTGTGCCTCAAAGC 156481 Query 83504 GACGCTACGTTCTCGATGAGCAAGACCCGGCCCCGTAAGAAGCCTAAGCTCACAGGTTCT 83563 || || ||||| ||| ||||| ||| | |||| || |||| | |||| | || | Sbjct 156482 GATGCCACGTTGTCGCCGAGCAGCACCTTGTCCCG-CAGGAGCCCAGGCTCCCGGGCCCC 156540 Query 83564 CCTCCGGTAATCGGGCGTGCTGAGAAGGCGT 83594 | |||| ||||| ||| | |||||||| Sbjct 156541 GCGCCGG----CGGGC-TGCAGCGAAGGCGT 156566 >seq2267 Length=308103 Score = 163 bits (180), Expect = 3e-35 Identities = 234/325 (72%), Gaps = 6/325 (2%) Strand=Plus/Minus Query 83057 AGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGC 83116 |||||| | || | ||||||||||| | | | |||| | ||| || ||||||| |||||| Sbjct 227150 AGCAGGACTTCCACGTCGGGCTCCATGTCGAAGGTCAGACAGTGGCGGCTGTATCTGCGC 227091 Query 83117 ACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGG 83176 || ||| || ||| | ||||| | ||||||||||||||||| | | || | ||||| Sbjct 227090 ACAGGCACGCGGTCCGGGCCCACTAGGAACTTCTCGAAGTTCCCGATGATGTTGATGCGG 227031 Query 83177 CACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTA 83236 |||||||| ||||| | |||| || ||||||| ||| ||||| ||| || | | Sbjct 227030 CACACTGGGGACCAAGTGATGAACTTGGGGTCGGTCATGAGCGCAGCGGCGTCATCACCA 226971 Query 83237 GGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACC 83296 || | ||| | ||||| | ||||||||||||||| | |||| | || || || ||| Sbjct 226970 -GCACGGGCTGAGCCTCCTGCAGGAAGGCGAAGAGCTG-TGTG-CAGCGCGCCATTCACC 226914 Query 83297 TCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTC 83356 | | | ||| |||||| | || || |||| ||| ||| || || ||||||| ||| Sbjct 226913 TTGAA---CTCAAAGAGCGTGAAATTGGGCTTGAACCCGCCTCCGGGTCGGACGTACTTG 226857 Query 83357 AGGGAAGGCAAGATCTCGGCATTCT 83381 ||| || | |||||| | |||| Sbjct 226856 AGGCAATTTAGGATCTCTTCGTTCT 226832 >seq343 Length=1061397 Score = 159 bits (176), Expect = 4e-34 Identities = 320/476 (67%), Gaps = 34/476 (7%) Strand=Plus/Minus Query 83097 AGCGGTGGCTGTACCTGCGCACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGT 83156 ||| | ||||| |||||||||| ||| || || | | ||||| |||||||||||||| Sbjct 687210 AGCAGCGGCTGCACCTGCGCACAGGCACACCATCCGGGCTCACCAGGAACTTCTCGAAGT 687151 Query 83157 TCCAGGCCACGTCGTTGCGGCACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGA 83216 | ||||| || | |||| ||||||||||||||||| |||| || ||||||| ||| | Sbjct 687150 TTCAGGCGACACCTTTGCAGCACACTGGAGACCAGGTGATGAACTTGGGGTCGGTCAGCA 687091 Query 83217 GCGTGCTCA--TGTCGTCGCTAGGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGG 83274 |||| | || ||| || || || |||||| Sbjct 687090 --GTGCAGAGTCGTTGTCACTGGGTGCAGGCAGG-------------------------- 687059 Query 83275 ATGTGCCCTTGCACCGTTGACCTCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCC 83334 || ||| || || | ||| ||| ||||| |||||| | ||| ||| ||| || Sbjct 687058 -TGCGCCTGCGCGCCACTCCCCTTGCAGTTCTCAAAGAGCTTGTTGTTGGGCAAGAACCC 687000 Query 83335 GTTCCCAGGACGGACGTGCTTCAGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTG 83394 | || ||||| |||| ||| || || |||||| | |||| |||||| | | | Sbjct 686999 GCCGCCTACTGGGACGAGCTTGAGGAAATTCAGGATCTCTTCGTTCTTGGCGTTCTGCGG 686940 Query 83395 GTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGCGCCG 83454 || |||||| || | | | ||| |||||||| ||||| ||||| | || |||| | | Sbjct 686939 ATGCCCGAACGGGGTGCGCTAGAAGCCAAGCACCACCAGGCCCCGGGGGCCGAGGCACTG 686880 Query 83455 CTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCG-TGCTACCTCAGAGGGACGCTACGT 83513 | ||||| |||||| || ||| | | || ||| | |||| |||||||| | |||| || Sbjct 686879 CAGCAGCCCGTTCACTTGGGTGGAGTTCCAGACGGTTGCT-CCTCAGAGCTAGGCTA-GT 686822 Query 83514 TCTCGATGAGCAAGACCCGGCCCCGTAAGAAGCCTAAGCTCACAGGTTCTCCTCCG 83569 |||| |||||| ||| | || | | |||| |||||| |||| || || ||| Sbjct 686821 TCTCAGTGAGCAGCACCTCATCTCGCAGGGAGCCCAAGCTCGCAGGCTCCCCGCCG 686766 >seq1105 Length=555799 Score = 134 bits (148), Expect = 2e-26 Identities = 240/342 (70%), Gaps = 9/342 (3%) Strand=Plus/Plus Query 83136 CCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGGCACACTGGAGACCAGGCAA 83195 |||||| ||| ||||| ||||||||||| | | | |||| ||||||| ||| ||||| | Sbjct 541498 CCACCAGGAAGTTCTCAAAGTTCCAGGCAAAGCCATTGCAGCACACTAGAGGCCAGGTGA 541557 Query 83196 TGAGCTGGGGGTCGCTCACGAGC---GTGCTCATGTCGTCGCTAGGCGCCGGCAGGGCCT 83252 |||||| |||||| ||| |||| ||| ||| || || | ||| ||||| |||| Sbjct 541558 TGAGCTTGGGGTCAATCAAGAGCTCAGTG-GCAT-TC-TCCATGGGCATAGGCAGAGCCT 541614 Query 83253 CTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACCTCGCACTTCTC-GAAG 83311 | | ||| || | || ||| | | ||| | || || ||||| |||| ||| |||| Sbjct 541615 CCCACAGGGAGACAAAAAGCAGGTATGCTTGGGTGCCATTCACCTCACACTGCTCAGAAG 541674 Query 83312 AGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTCAGGGAAGGCAAGATC 83371 || | ||||| ||||| | || | ||||| ||| || ||| || ||| || ||| Sbjct 541675 AGAGTGAAGTTGGGCTCACATCCTCTGCCAGGTTGGATGTACTTGAGAGAATTCAGGATT 541734 Query 83372 TCGGCATTCTGGGCGTTTTCCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACC 83431 || |||| ||| || ||||| || | ||||||||| || || || | || || ||| Sbjct 541735 TCTTAGTTCTTGGCATTCTCCTGATGCCTGAACTGGTTGCATGGAAAGCAGAGTACAACC 541794 Query 83432 AGCCCCCGAGCTCCTAGGCGCCGCTGCAGCTC-GTTCATCTG 83472 | ||| | | || |||| | ||| ||||| |||||| || Sbjct 541795 TGGCCCTGTG-GCCCAGGCACTGCTAGAGCTCAGTTCATTTG 541835 >seq32 Length=2495125 Score = 114 bits (126), Expect = 2e-20 Identities = 202/287 (70%), Gaps = 7/287 (2%) Strand=Plus/Plus Query 50410 GCACCTGCGCAAGATGTACG-GCGCAAGCAGGTCTATCTACAACTTCGCTGTGCGTATGC 50468 ||| ||||||| || |||| | ||| || ||| ||| ||||||||| ||| ||| Sbjct 2411649 GCAGCTGCGCAGCATCTACGAGAGCA-GCCTGTCCATCGGCAACTTCGCCTCGCGCCTGC 2411707 Query 50469 TCGTGTACATGTTTCCAGAGCTCTTTACTGCGGAGAACCTGCACACGCACTTCAACTGCT 50528 | ||| || | || || |||||||| || |||||||||| || ||| | ||||||| Sbjct 2411708 TGGTGCACCTCTTCCCCGAGCTCTTCACCCACGAGAACCTGCGCAAGCAGTACAACTGCA 2411767 Query 50529 ACGGCTCCATGGGCAAGC-GCAGGCTCGACCCGCTACGCCTGCGCTTGCTCCGGCACTAT 50587 ||||||| |||||||| ||| || |||||| ||| | | |||| ||||| Sbjct 2411768 GCGGCTCCCTGGGCAAGAAGCAA-CTGGACCCGTCCCGCATCAAGCTCATCCGCCACTAC 2411826 Query 50588 GTGCAGTTGCTGCACCCGGCGGCGCGCAACGAGCGCGTGTGGATCACAAAGTTCCTGGCG 50647 |||||| |||| |||| ||| ||||| || || |||| | |||| ||| Sbjct 2411827 GTGCAGCTGCTCTACCCCCGGGCCAAAAACGACCGTGTCTGGACCCTGGAGTTTGTGGGC 2411886 Query 50648 TGCCTGGACGAGCGCTGCCGGCGCCGCTGCGCACGGA-CACAGGCGC 50693 ||||||||||||||||||||| | | |||||| || |||||| Sbjct 2411887 AAACTGGACGAGCGCTGCCGGCGCAG--GGACACGGAGCAGAGGCGC 2411931 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 608392733953880