Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Equus_20przewalskii_20[refseq_20GCF_5F000696695.1_202014-06-05] 53,097 sequences; 2,395,954,271 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq23030 129 5e-25 seq5432 127 2e-24 seq2765 87.8 2e-12 >seq23030 Length=1446 Score = 129 bits (142), Expect = 5e-25 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||| | || ||||| || || |||||||| || || |||||| |||||| Sbjct 753 ACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCCTCC 812 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || || ||| ||||||| | |||||| ||||| || |||||||||||||| Sbjct 813 AGCTGCTTCCCGGCGAAGATGAGCCTCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGG 872 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | |||| |||||| || ||| ||||| | ||| | || ||| Sbjct 873 ATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTG 932 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||||||| || || ||||| |||||||| Sbjct 933 CCGGTCAGGGTCTTCACAAAGATCTGCAT 961 Score = 114 bits (126), Expect = 1e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 || ||||| ||| | || |||||||| || ||||||||||| | |||||| ||| Sbjct 65 CAGCACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATC 124 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 || ||||| || || || ||||||| | |||||| ||||| || ||||||||||| || Sbjct 125 TTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGGATGCCCTCCTTATC 184 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 || || || || | |||| |||||| || ||| ||||| | ||| | || Sbjct 185 CTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGT 244 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || ||||| || || || ||||||||||| Sbjct 245 CTTCCCCGTCAGGGTCTTCACGAAAATCTGCAT 277 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||| | || ||||| || || |||||||| || || |||||| |||||| Sbjct 297 ACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCCTCC 356 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || || ||| ||||||| | |||||| ||||| || |||||||| || || Sbjct 357 AGCTGCTTCCCGGCGAAGATGAGCCTCTGCTGGTCGGGGGGGATGCCCTCTTTATCCTGG 416 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | |||| |||||| || ||| ||||| | ||| | || || Sbjct 417 ATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTC 476 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || ||||| || || || ||||||||||| Sbjct 477 CCCGTCAGGGTCTTCACGAAAATCTGCAT 505 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||| | || ||||| || || |||||||| || || |||||| |||||| Sbjct 525 ACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCCTCC 584 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || || ||| ||||||| | |||||| ||||| || |||||||| || || Sbjct 585 AGCTGCTTCCCGGCGAAGATGAGCCTCTGCTGGTCGGGGGGGATGCCCTCTTTATCCTGG 644 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | |||| |||||| || ||| ||||| | ||| | || || Sbjct 645 ATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTC 704 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || ||||| || || || ||||||||||| Sbjct 705 CCCGTCAGGGTCTTCACGAAAATCTGCAT 733 >seq5432 Length=86301 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCT 118570 |||||| | || | || |||| ||| | ||||| ||||| || |||||||| || Sbjct 81688 ACCTCCCCTCAAGCGCAGGACCAGGTGCAGAGTAGATTCTTTCTGGATGTTGTAGTCAGA 81629 Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630 || |||||| |||||| ||||| || || ||| ||||||| | |||||| ||||| || Sbjct 81628 CAGGGTGCGCCCATCCTCCAGCTGCTTCCCGGCGAAGATGAGCCTCTGCTGGTCGGGGGG 81569 Query 118631 TATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGAC 118690 |||||||||||||| || || || || | |||| |||||| || ||| || Sbjct 81568 GATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCAC 81509 Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||| | ||| | || || || ||||| || || || ||||||||||| Sbjct 81508 CTCCAGGGTGATGGTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCAT 81461 Score = 87.8 bits (96), Expect = 2e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||| | || ||||| || || |||||||| || || |||||| |||||| Sbjct 81441 ACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCCTCC 81382 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTT 118642 ||||| || || ||| ||||||| | |||||| ||||| || ||||||||||| Sbjct 81381 AGCTGCTTCCCGGCGAAGATGAGCCTCTGCTGGTCGGGGGGGATGCCCTCCTT 81329 >seq2765 Length=245924 Score = 87.8 bits (96), Expect = 2e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 118583 ATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTT 118642 |||||| |||| | | || || | | ||||||||||| || || |||||||| || Sbjct 130700 ATCCTCCAGCTATCTGCCCGCACAAACCAGACGCTGCTGGTCAGGCAAGATGCCCTCGTT 130759 Query 118643 GTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCAC 118702 |||| ||||| |||||| | || |||||| || ||||||||||| ||| | Sbjct 130760 GTCTTGGATTTTAGCTTTAACATTCTCAGTGGTGTCACTGGCCTCGACCTCGAAGGTGAT 130819 Query 118703 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || ||||| ||||| || || ||||| |||||||| Sbjct 130820 GGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 130855 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433549659807124