Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Equus_20przewalskii_20[refseq_20GCF_5F000696695.1_202014-06-05] 53,097 sequences; 2,395,954,271 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq300 84.2 4e-11 >seq300 Length=1131972 Score = 84.2 bits (92), Expect = 4e-11 Identities = 103/137 (75%), Gaps = 4/137 (3%) Strand=Plus/Minus Query 52053 TCAGGCATTTTTTGGAGCTCAGCTAAATTCTTTTATCCATGTTATTATGTACACTTATTA 52112 ||| || ||||| ||||| ||| | ||||| | |||||||| ||||||||| | || || Sbjct 342164 TCAAGCTTTTTTCGGAGCCCAGATGAATTCCCTCATCCATGTGATTATGTACTCCTACTA 342105 Query 52113 TGGTATGGCCGCTTGTGGTCCTATG--TTCAGAAAGTATCTATGGTGGAAACGTTATCTT 52170 || | || | ||| || ||| ||||||| |||||| ||||||||||| || || Sbjct 342104 CGGCTTAAGTGCGTTTGGCCC-ATGGATTCAGAA-GTATCTTTGGTGGAAACGATACCTG 342047 Query 52171 ACTATAATGCAGTTGGT 52187 ||||| ||||| |||| Sbjct 342046 ACTATGTTGCAGCTGGT 342030 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 922584062743880