Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Equus_20przewalskii_20[refseq_20GCF_5F000696695.1_202014-06-05]
53,097 sequences; 2,395,954,271 total letters
Query= NC_002331.1
Length=178733
Score E
Sequences producing significant alignments: (Bits) Value
seq23030 150 2e-31
seq5432 122 1e-22
seq3062 102 9e-17
seq7719 100 3e-16
seq5307 98.7 1e-15
seq5092 98.7 1e-15
seq317 98.7 1e-15
seq9705 89.7 6e-13
seq538 89.7 6e-13
>seq23030
Length=1446
Score = 150 bits (166), Expect = 2e-31
Identities = 173/233 (74%), Gaps = 0/233 (0%)
Strand=Plus/Plus
Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016
|| ||||| | ||||| |||| |||| ||| |||||| || || ||||| |||| |
Sbjct 735 CCACCTCTGAGACGCAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAC 794
Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076
|| || ||| | || || |||||||| || ||||| ||||| | ||||||||||| ||
Sbjct 795 AGGGTGCGCCCATCCTCCAGCTGCTTCCCGGCGAAGATGAGCCTCTGCTGGTCGGGGGGG 854
Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 43136
| || |||||||||| ||| || |||| || | | |||||||| | |||||
Sbjct 855 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCACC 914
Query 43137 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTTAC 43189
|| | |||||||| ||||| || || ||||| |||||||| |||||||| ||
Sbjct 915 TCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCATTTTGAC 967
Score = 125 bits (138), Expect = 8e-24
Identities = 164/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016
|| ||||| | ||||| |||| |||| ||| |||||| || || ||||| |||| |
Sbjct 279 CCACCTCTGAGACGCAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAC 338
Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076
|| || ||| | || || |||||||| || ||||| ||||| | ||||||||||| ||
Sbjct 339 AGGGTGCGCCCATCCTCCAGCTGCTTCCCGGCGAAGATGAGCCTCTGCTGGTCGGGGGGG 398
Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 43136
| || ||| || ||| ||| || |||| || | | |||||||| | |||||
Sbjct 399 ATGCCCTCTTTATCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCACC 458
Query 43137 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183
|| | |||||||| || ||||| || ||||| || || || |||||
Sbjct 459 TCCAGGGTGATGGTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCAT 505
Score = 125 bits (138), Expect = 8e-24
Identities = 164/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016
|| ||||| | ||||| |||| |||| ||| |||||| || || ||||| |||| |
Sbjct 507 CCACCTCTGAGACGCAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAC 566
Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076
|| || ||| | || || |||||||| || ||||| ||||| | ||||||||||| ||
Sbjct 567 AGGGTGCGCCCATCCTCCAGCTGCTTCCCGGCGAAGATGAGCCTCTGCTGGTCGGGGGGG 626
Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 43136
| || ||| || ||| ||| || |||| || | | |||||||| | |||||
Sbjct 627 ATGCCCTCTTTATCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCACC 686
Query 43137 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183
|| | |||||||| || ||||| || ||||| || || || |||||
Sbjct 687 TCCAGGGTGATGGTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCAT 733
Score = 116 bits (128), Expect = 4e-21
Identities = 162/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016
|| ||||| | |||| ||||| |||| || ||| || || || ||||||||||
Sbjct 51 CCGCCTCTCAGGCGCAGCACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAA 110
Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076
||||| || | || || |||||||| || || || ||||| | ||||||||||| ||
Sbjct 111 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGG 170
Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 43136
| || |||||| ||| ||| || |||| || | | |||||||| | |||||
Sbjct 171 ATGCCCTCCTTATCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCACC 230
Query 43137 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183
|| | |||||||| || ||||| || ||||| || || || |||||
Sbjct 231 TCCAGGGTGATGGTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCAT 277
>seq5432
Length=86301
Score = 122 bits (134), Expect = 1e-22
Identities = 163/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016
||||| || || |||| |||| |||| || || || || || ||||| |||| |
Sbjct 81687 CCTCCCCTCAAGCGCAGGACCAGGTGCAGAGTAGATTCTTTCTGGATGTTGTAGTCAGAC 81628
Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076
|| || ||| | || || |||||||| || ||||| ||||| | ||||||||||| ||
Sbjct 81627 AGGGTGCGCCCATCCTCCAGCTGCTTCCCGGCGAAGATGAGCCTCTGCTGGTCGGGGGGG 81568
Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 43136
| || |||||||||| ||| || |||| || | | |||||||| | |||||
Sbjct 81567 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCACC 81508
Query 43137 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183
|| | |||||||| || ||||| || ||||| || || || |||||
Sbjct 81507 TCCAGGGTGATGGTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCAT 81461
Score = 98.7 bits (108), Expect = 1e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| || | ||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 66565 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 66506
Query 60126 TACTACCGAGGA 60137
||||| ||||||
Sbjct 66505 TACTAACGAGGA 66494
Score = 98.7 bits (108), Expect = 1e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| || | ||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 71571 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 71512
Query 60126 TACTACCGAGGA 60137
||||| ||||||
Sbjct 71511 TACTAACGAGGA 71500
Score = 93.3 bits (102), Expect = 5e-14
Identities = 99/131 (76%), Gaps = 0/131 (0%)
Strand=Plus/Minus
Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016
|| ||||| | ||||| |||| |||| ||| |||||| || || ||||| |||| |
Sbjct 81459 CCACCTCTGAGACGCAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAC 81400
Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076
|| || ||| | || || |||||||| || ||||| ||||| | ||||||||||| ||
Sbjct 81399 AGGGTGCGCCCATCCTCCAGCTGCTTCCCGGCGAAGATGAGCCTCTGCTGGTCGGGGGGG 81340
Query 43077 ACGCTCTCCTT 43087
| || ||||||
Sbjct 81339 ATGCCCTCCTT 81329
>seq3062
Length=218253
Score = 102 bits (112), Expect = 9e-17
Identities = 68/76 (89%), Gaps = 0/76 (0%)
Strand=Plus/Minus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| || | ||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 59049 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 58990
Query 60126 TACTACCGAGGATTGA 60141
||||| |||||| |||
Sbjct 58989 TACTAACGAGGACTGA 58974
>seq7719
Length=33101
Score = 100 bits (110), Expect = 3e-16
Identities = 66/73 (90%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124
||||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 16947 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 17006
Query 60125 ATACTACCGAGGA 60137
|||||| ||||||
Sbjct 17007 ATACTAACGAGGA 17019
>seq5307
Length=90612
Score = 98.7 bits (108), Expect = 1e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| || | ||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 29460 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 29519
Query 60126 TACTACCGAGGA 60137
||||| ||||||
Sbjct 29520 TACTAACGAGGA 29531
>seq5092
Length=98861
Score = 98.7 bits (108), Expect = 1e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| || | ||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 63676 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 63617
Query 60126 TACTACCGAGGA 60137
||||| ||||||
Sbjct 63616 TACTAACGAGGA 63605
>seq317
Length=1097310
Score = 98.7 bits (108), Expect = 1e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| || | ||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 99229 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 99170
Query 60126 TACTACCGAGGA 60137
||||| ||||||
Sbjct 99169 TACTAACGAGGA 99158
>seq9705
Length=12565
Score = 89.7 bits (98), Expect = 6e-13
Identities = 57/62 (92%), Gaps = 0/62 (0%)
Strand=Plus/Plus
Query 60076 GGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAG 60135
||||||||||||| ||||||||||||||||||||| |||||||||||||||||| | ||
Sbjct 1700 GGGAATCGAACCCAGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTATACTAACAAG 1759
Query 60136 GA 60137
||
Sbjct 1760 GA 1761
>seq538
Length=847391
Score = 89.7 bits (98), Expect = 6e-13
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| || | |||||| |||||| ||||||||||||||||||||| ||||| |||||||
Sbjct 268730 CTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 268671
Query 60126 TACTACCGAGGA 60137
||||| ||||||
Sbjct 268670 TACTAACGAGGA 268659
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 571438077511160
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