Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Equus_20przewalskii_20[refseq_20GCF_5F000696695.1_202014-06-05] 53,097 sequences; 2,395,954,271 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq23030 127 1e-24 seq5432 125 5e-24 seq5247 84.2 1e-11 >seq23030 Length=1446 Score = 127 bits (140), Expect = 1e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34177 CAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTC 34236 ||| |||||||| | ||| || ||||| ||||||||||| ||||| || | || Sbjct 749 CAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATC 808 Query 34237 GTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTC 34296 |||| |||||| || ||||| ||||||| |||||||||| ||| | || ||||||||| Sbjct 809 CTCCAGCTGCTTCCCGGCGAAGATGAGCCTCTGCTGGTCGGGGGGGATGCCCTCCTTGTC 868 Query 34297 GGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGT 34356 ||||| ||| | | | || | ||| | | || || |||| |||||||| Sbjct 869 CTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGT 928 Query 34357 TTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||||||| || || ||||||||||||||||| Sbjct 929 CTTGCCGGTCAGGGTCTTCACAAAGATCTGCAT 961 Score = 118 bits (130), Expect = 7e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||| | ||| | |||||||||||| | || |||||||| |||||||| || || Sbjct 51 CCGCCTCTCAGGCGCAGCACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAA 110 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| | || |||| |||||||||||| || ||||||| |||||||||| ||| Sbjct 111 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGG 170 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || |||||| || ||||| ||| | | | || | ||| | | || || Sbjct 171 ATGCCCTCCTTATCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCACC 230 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 |||| |||||||| || || || || || ||||| || ||||||||| Sbjct 231 TCCAGGGTGATGGTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCATC 278 Score = 102 bits (112), Expect = 5e-17 Identities = 151/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 34177 CAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTC 34236 ||| |||||||| | ||| || ||||| ||||||||||| ||||| || | || Sbjct 293 CAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATC 352 Query 34237 GTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTC 34296 |||| |||||| || ||||| ||||||| |||||||||| ||| | || ||| || || Sbjct 353 CTCCAGCTGCTTCCCGGCGAAGATGAGCCTCTGCTGGTCGGGGGGGATGCCCTCTTTATC 412 Query 34297 GGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGT 34356 ||||| ||| | | | || | ||| | | || || |||| |||||||| Sbjct 413 CTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGT 472 Query 34357 TTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || || || || || ||||| || ||||||||| Sbjct 473 CTTCCCCGTCAGGGTCTTCACGAAAATCTGCATC 506 Score = 102 bits (112), Expect = 5e-17 Identities = 151/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 34177 CAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTC 34236 ||| |||||||| | ||| || ||||| ||||||||||| ||||| || | || Sbjct 521 CAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATC 580 Query 34237 GTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTC 34296 |||| |||||| || ||||| ||||||| |||||||||| ||| | || ||| || || Sbjct 581 CTCCAGCTGCTTCCCGGCGAAGATGAGCCTCTGCTGGTCGGGGGGGATGCCCTCTTTATC 640 Query 34297 GGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGT 34356 ||||| ||| | | | || | ||| | | || || |||| |||||||| Sbjct 641 CTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGT 700 Query 34357 TTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || || || || || ||||| || ||||||||| Sbjct 701 CTTCCCCGTCAGGGTCTTCACGAAAATCTGCATC 734 >seq5432 Length=86301 Score = 125 bits (138), Expect = 5e-24 Identities = 156/214 (73%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 34177 CAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTC 34236 ||| |||||||| | |||| ||||||||| ||||||||||| ||||| || | || Sbjct 81673 CAGGACCAGGTGCAGAGTAGATTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATC 81614 Query 34237 GTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTC 34296 |||| |||||| || ||||| ||||||| |||||||||| ||| | || ||||||||| Sbjct 81613 CTCCAGCTGCTTCCCGGCGAAGATGAGCCTCTGCTGGTCGGGGGGGATGCCCTCCTTGTC 81554 Query 34297 GGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGT 34356 ||||| ||| | | | || | ||| | | || || |||| |||||||| Sbjct 81553 CTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGT 81494 Query 34357 TTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || || || || || ||||| || ||||||||| Sbjct 81493 CTTCCCCGTCAGGGTCTTCACGAAAATCTGCATC 81460 Score = 86.0 bits (94), Expect = 4e-12 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 34177 CAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTC 34236 ||| |||||||| | ||| || ||||| ||||||||||| ||||| || | || Sbjct 81445 CAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATC 81386 Query 34237 GTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTT 34293 |||| |||||| || ||||| ||||||| |||||||||| ||| | || |||||| Sbjct 81385 CTCCAGCTGCTTCCCGGCGAAGATGAGCCTCTGCTGGTCGGGGGGGATGCCCTCCTT 81329 >seq5247 Length=92488 Score = 84.2 bits (92), Expect = 1e-11 Identities = 148/213 (69%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||||| ||| | || ||| |||| || |||||||| || || ||| | || Sbjct 12483 AGCACCAAGTGCAGGGTGGAGTCTCTCTGGATATTGTAGTCTGAGAGAGTGCGGCCATCT 12542 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 |||| ||| ||||| || ||||| || | |||||||| || | || ||| ||||| Sbjct 12543 TCCAGCTGTTTGCCGGCAAAAATCAGACATTGCTGGTCAGGTGGGATGCCCTCTTTGTCT 12602 Query 34298 GCTATCTTTTGCTTTAG-ATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGT 34356 || ||| |||||| || | || | || | || || || || | |||||||| Sbjct 12603 TGGAT-TTTAGCTTTAACATTCTCAATGGTGTCACTGGACTCAACCTCAAGGGTGATGGT 12661 Query 34357 TTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 ||||| || || || ||||||||||||||||| Sbjct 12662 CTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 12694 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 322862933748320