Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Equus_20przewalskii_20[refseq_20GCF_5F000696695.1_202014-06-05] 53,097 sequences; 2,395,954,271 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq5067 1752 0.0 seq264 120 2e-22 seq1891 82.4 5e-11 >seq5067 Length=99908 Score = 1752 bits (1942), Expect = 0.0 Identities = 1375/1648 (83%), Gaps = 41/1648 (2%) Strand=Plus/Minus Query 107140 TCTTAGGCAGGACTTGACTGAGGATATTTGTCTATAGAAGACATCTATCTTTACCATCAC 107199 || |||||||| ||||||||||||| | |||||| |||| || || ||| ||||||| Sbjct 19240 TCCTAGGCAGGTCTTGACTGAGGATTTGTGTCTAAAGAA---ATAGATTTTTGCCATCAC 19184 Query 107200 TCTGGAGTTGAACTTGATGTTCT--------------GGATTAGTTTGTAATTAAAGGCA 107245 | |||||||||||||||||||| || ||||||||||| | |||||| Sbjct 19183 TTTGGAGTTGAACTTGATGTTCCTATGAGCGTGTTCAGGGTTAGTTTGTAACTGAAGGCA 19124 Query 107246 TTTTGTTCTGTCCAAGGATCTCCTCCTCCACCTTGCCTGTGCCCAAACTCTCCTGATCTC 107305 ||||||||||||||||||| ||||||||| |||| | |||||| |||| || | ||| Sbjct 19123 TTTTGTTCTGTCCAAGGAT-TCCTCCTCCGCCTTCCGTGTGCCTAAACCCTGCCAGTCTG 19065 Query 107306 CCATCCCATGAAGATGGCTGGGTGGAAGAAGAAGCTTTGCCGGGGACATCATCTGTGGGC 107365 | || ||||||||||| | |||||||||||| || | |||| | | ||||| ||| Sbjct 19064 CTATGCCATGAAGATGCTTCGGTGGAAGAAGACACTCTTCCGGCAGCGTTGTCTGTTGGC 19005 Query 107366 CCTGGGCTGCTATATGCTGCTGGCCGTTGTTTCTCTGAGACTTTCCCTCAGGTTTAAATG 107425 ||||||||||||||||||||||||| ||||| |||||||| |||| ||||| || ||||| Sbjct 19004 CCTGGGCTGCTATATGCTGCTGGCCATTGTTGCTCTGAGATTTTCTCTCAGATTGAAATG 18945 Query 107426 TGATGTAGATTCCTTGGATCTGGAGTCCAGGGACTTCCAGAGTCAGCACTGTAGGGACAT 107485 ||| | ||||| ||| |||||||||||||||||| ||||| |||| |||| |||| || Sbjct 18944 TGACTTTAATTCCCTGGGTCTGGAGTCCAGGGACTTTCAGAGCCAGCGCTGTCGGGATAT 18885 Query 107486 GTTGTACAATAGCCTGAAGCTGCCAGCAAAGAGATCCATCAACTGTTCTGGGATCACGCG 107545 |||||||| ||||||||||||||||| |||| ||||||||||||||||||||| || Sbjct 18884 CTTGTACAAGGCCCTGAAGCTGCCAGCAAGGAGACCCATCAACTGTTCTGGGATCATCCG 18825 Query 107546 AGGGGACCAGGAAGCAGTGGTCCAGGCCCTCCTAGACAACCTGGAAGTGAAGAAAAAGCG 107605 ||||||| |||| ||| |||| ||||| ||||| ||||| |||||| ||||| Sbjct 18824 TGGGGACCGCACAGCATTGGGAGAGGCTCTCCTGGACAAGCTGGACACGAAGAAGAAGCG 18765 Query 107606 GTCGCCTCTCACTGGCACCTATTACCTCAACATAACCAGAGACTGTGAGCGCTTCAAGGC 107665 | |||| |||| | |||| | ||||||||||| |||||||||||||| | ||| ||||| Sbjct 18764 GGAGCCTTTCACAGACACCGACTACCTCAACATGACCAGAGACTGTGAACACTTTAAGGC 18705 Query 107666 CCAAAGGAAGTTCATACAGTTCCCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTA 107725 | |||||||||||||||||||||||||||| || |||||| |||| ||||| ||||| || Sbjct 18704 CGAAAGGAAGTTCATACAGTTCCCACTGAGCAAGGAAGAGTTAGATTTCCCTATTGCATA 18645 Query 107726 CTCGATGGTGGTCCATGAGAAGATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGC 107785 ||| ||||||||||||||||||||||||||||||||| |||| |||||||| |||||||| Sbjct 18644 CTCTATGGTGGTCCATGAGAAGATTGAAAACTTTGAAAGGCTTCTGCGAGCTGTGTATGC 18585 Query 107786 CCCTCAGAACATATACTGTGTCCACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGC 107845 ||||||||||||||||||| |||||||||||| ||||||||||||||||||||| ||||| Sbjct 18584 CCCTCAGAACATATACTGTATCCACGTGGATGAGAAGTCCCCAGAGACTTTCAAGGAGGC 18525 Query 107846 GGTCAAGGCCATTATTTCCTGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGT 107905 ||||| || |||||||| |||||||| ||||||||| |||||||||||||||| | ||| Sbjct 18524 AGTCAAAGCAATTATTTCATGCTTCCCTAATGTCTTCTTGGCCAGTAAGTTGGTTCGGGT 18465 Query 107906 GGTTTATGCCTCCTGGTCCAGAGTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCA 107965 ||||||||||||||||||||| ||||| |||||| ||||||| |||||||||||||||| Sbjct 18464 GGTTTATGCCTCCTGGTCCAGGGTGCAGGCTGACTTGAACTGCATGGAAGACTTGCTCCG 18405 Query 107966 GAGCTCAGTGCCATGGAAGTACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGAC 108025 ||||||||| |||||||| ||||| || |||||||||||||||||||| || |||||||| Sbjct 18404 GAGCTCAGTTCCATGGAAATACTTCCTAAATACATGCGGGACAGACTTTCCTATAAAGAC 18345 Query 108026 CAATGCCGAGATGGTCCTGGCCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGA 108085 |||||| ||||||||||||||||||||||||||||| || ||||||||||||||||| || Sbjct 18344 CAATGCTGAGATGGTCCTGGCCCTCAAGATGTTGAATGGGAAGAACAGTATGGAGTCAGA 18285 Query 108086 GGTACCTTCTGAGTCCaaaaaaaaTCGCTGGAAATACCGCTATGAGGTGACAGACACACT 108145 | ||||| |||||| ||||||| |||||||||||| | |||||| |||||||||||||| Sbjct 18284 GATACCTACTGAGTACAAAAAATCTCGCTGGAAATATCACTATGAAGTGACAGACACACT 18225 Query 108146 GTACCCTACCAGCAAGATGAAGGACCCTCCCCCTGATAATTTACCCATGTTCACAGGGAA 108205 | || ||||||| |||||||||||||| ||||| |||||||| ||||||||||| || Sbjct 18224 GCACAGAACCAGCAGAATGAAGGACCCTCCTCCTGACAATTTACCTATGTTCACAGGTAA 18165 Query 108206 TGCCTATTTTGTGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAAATCCCA 108265 ||||||| ||||||| |||||| |||| | ||||||||||||| ||||| ||||| | Sbjct 18164 TGCCTATATTGTGGCTTCTCGAAGCTTTATTGAACATGTCTTAGAGAACCCCAAATCACG 18105 Query 108266 AAGACTGGTTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCT 108325 | ||| |||||||||| |||||||||||||||||||| |||||||||||||||||||| Sbjct 18104 ACAGCTGATTGAATGGGTAAAAGACACCTATAGCCCCGATGAACACCTCTGGGCCACCCT 18045 Query 108326 TCAGCGTGCTCCGTGGATGCCTGGCTCTGTTCCTAGCCACCCCAAGTATCACATCTCAGA 108385 ||||||||| || |||||||||||||||||||| |||||||||| |||||||||||| Sbjct 18044 TCAGCGTGCACCATGGATGCCTGGCTCTGTTCCCTATCACCCCAAGTTTCACATCTCAGA 17985 Query 108386 CATGACTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGG 108445 |||||||||||| || ||||| |||||||||||| ||| |||||| | |||| ||||| Sbjct 17984 CATGACTGCCATTGCTAGGCTGGTCAAGTGGCAGGGCCATGAGGGAAACATCAGTATGGG 17925 Query 108446 GGCGCCTTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGG 108505 ||| ||||||| ||| |||||||||||||| | | |||| ||||| ||||| || | || Sbjct 17924 GGCACCTTATGAACCTTGCTCTGGAATCCACCAGCGGGCTATCTGTATTTATGGAACTGG 17865 Query 108506 GGACCTGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGACCCGAGGGT 108565 |||||| |||||||| |||||||||||||| ||||| |||||||||||||| | ||| Sbjct 17864 AGACCTGCCTTGGATTCTTCAGAACCATCACCTGTTGGCCAACAAGTTTGACCCAAAGGT 17805 Query 108566 GGATGATAACGTCCTGCAGTGCTTAGAAGAGTACCTACGTCATAAGGCCATCTATGGGAC 108625 ||||||||| || || |||||||||||||||||| ||||| ||||||| |||| ||||| Sbjct 17804 GGATGATAATGTTCTTCAGTGCTTAGAAGAGTACTTACGTTATAAGGCTGTCTACGGGAC 17745 Query 108626 TGAACTTTGAGCTGCACTGTG---------------------GGCCAGGGAC-TGTGCCA 108663 |||||| |||| | | ||||| || |||| || ||||| | Sbjct 17744 TGAACTCTGAGATACCCTGTGAGAGAATTGCTACCTGGGTGAGGGCAGGAACATGTGCAA 17685 Query 108664 ACATGCCCAGGGCGTACTGGTACTGTGTGGGGTGGGGGACGAGGGCTGTGGAATCCATGG 108723 |||||||||| || | || || |||| ||||||| || |||||| |||||||||||| Sbjct 17684 ACATGCCCAGAATGTGCCGGGACAGTGT-GGGTGGGAGATCAGGGCTCTGGAATCCATGG 17626 Query 108724 CATCCCCCAGGGTCAGAGGGCTGCTTTG 108751 | ||||||||||| || |||||||| || Sbjct 17625 CGTCCCCCAGGGTAAGTGGGCTGCTCTG 17598 >seq264 Length=1214627 Score = 120 bits (132), Expect = 2e-22 Identities = 570/889 (64%), Gaps = 29/889 (3%) Strand=Plus/Minus Query 107688 CCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAG 107747 || || |||||||||||| ||| || || || || || || || || || ||| | || Sbjct 427160 CCCCTTAGTAAAGAAGAGGCAGAGTTTCCAATAGCATATTCTATAGTCGTTCATCACAAA 427101 Query 107748 ATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTC 107807 ||||||| |||| |||| ||| | ||| | || || ||||| | || || | Sbjct 427100 ATTGAAATGCTTGACAGGCTCCTGAGGGCCATCTACATGCCACAGAATTTCTATTGCATT 427041 Query 107808 CACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGC 107867 || ||||| || || || | || | |||||| | | ||| ||||| Sbjct 427040 CATGTGGACAGAAAATCAGAGGATTCCTTTTTGGCGGCGGTGATTGGCATCGCATCCTGT 426981 Query 107868 TTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGA 107927 ||| |||||||| |||||||| || ||| ||||| || ||||| ||| | Sbjct 426980 TTCAGTAATGTCTTTGTGGCCAGTCAGCTGGAGAGCGTGGTGTACGCCTCATGGAGTCGC 426921 Query 107928 GTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCA--TGGAAGT 107985 || || |||||||| ||||| ||| | ||| | || |||| | ||||| ||||||| Sbjct 426920 GTTCAGGCTGACCTCAACTGCATGCAGGACCT-CTACAGAA-TGAGTGCAGACTGGAAGT 426863 Query 107986 ACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGG 108045 |||| | ||| || || | || || || || || ||||| || || ||| | Sbjct 426862 ACTTGATCAATCTTTGTGGTATGGATTTTCCTATTAAAACCAACCTGGAAATTGTCAGGA 426803 Query 108046 CCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTA---CCTTCTGAGTCCa 108102 |||||| ||| | ||| | |||| | || ||||| | || || | | Sbjct 426802 AGCTCAAGTCGTTAATGGGAGAAAACAACCTAGAAACTGAGAGAATGCCATCCAAT---A 426746 Query 108103 aaaaaaaTCGCTGGAAATACCGCTATG-AG--GTGACAGACACACTGTACCCTACCAGCA 108159 ||||| | | |||||| | | |||| || || | | | ||| || ||| Sbjct 426745 AAAAAGAAAGGTGGAAAAAGCATTATGCAGTCGTAAATGGAAAGCTG-ACAAACACAGGG 426687 Query 108160 A--GATGAAGG--ACCCTCCCCCTGATAATTTACCCATGTTCACAGGGAATGCCTATTTT 108215 | || ||| ||||||| | ||| | || |||| |||| | |||||||||| Sbjct 426686 ACTGACAAAGTGCACCCTCCTCTTGAAACG---CCTCTGTTTTCAGGCAGTGCCTATTTT 426630 Query 108216 GTGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAAATCCCAAAGACTGGTT 108275 |||| | | | | | ||| | | || |||| || ||| ||| | | | Sbjct 426629 GTGGTCAGTAGGGAGTATGTGGAGTACGTTCTAGAGAATGAAAAAATCCAGAAGTTTATG 426570 Query 108276 GAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTGCT 108335 || |||| ||||||||| || ||||| || || | ||||||||||| |||||||| | | Sbjct 426569 GAGTGGGCCAAAGACACATACAGCCCGGATGAGTATCTCTGGGCCACTCTTCAGCG-GAT 426511 Query 108336 CCGTGGA-TGCCTGGCTCTGT-TCCT--AGCCACCCCAAGTATCACATCTCAGACATGAC 108391 || || | | || ||||| | |||| ||||| |||||| |||| || |||||| Sbjct 426510 CCCTGAAGTCCCAGGCTCGCTGTCCTTAAGCCA---TAAGTATGACATGTCCGACATGCA 426454 Query 108392 TGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCC 108451 ||| || || || | ||||||||||||||| || || || | || ||| || || Sbjct 426453 TGCGATTGCTAGATTTGTCAAGTGGCAGTACTTTGAAGGTGACATTTCCAAGGGTGCCCC 426394 Query 108452 TTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCT 108511 || |||||||| || |||| | | | ||| | | || || || ||| | Sbjct 426393 CTACCCACCCTGCAGCGGGGTCCACGTTCGTTCTGTGTGCGTCTTTGGAGCAGGTGACTT 426334 Query 108512 GTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGACCCG 108560 | ||||||| || | | || ||| | || || || ||||||||| || Sbjct 426333 GAACTGGATGCTGCGCATGCACCACTTGTTTGCCAATAAGTTTGACACG 426285 >seq1891 Length=361294 Score = 82.4 bits (90), Expect = 5e-11 Identities = 227/339 (67%), Gaps = 12/339 (4%) Strand=Plus/Minus Query 107696 TAAAGAAGA-GCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAGATTGAAA 107754 ||||||||| ||| || || || | || || | ||||| ||||| | || | || | Sbjct 252587 TAAAGAAGAAGCT-GAATTTCCTTTGGCGTATACAATGGTCATCCATCACAATTTCGATA 252529 Query 107755 ACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTCCACGTGG 107814 ||||| | |||| | |||| | || |||||||| | |||||||| || |||| Sbjct 252528 CCTTTGCAAGGCTCTTCAGAGCTATTTACATGCCTCAGAATGTCTACTGTGTTCATGTGG 252469 Query 107815 ATGTGAAGTCCCCAGA-GACTTTCAAAGAGGCGGTCAAGGCCATTATTTC-CTGCTTCCC 107872 ||| ||| | ||| || ||| ||||| ||||| || | |||| | ||||||||| Sbjct 252468 ATGAAAAGGCGACAGTCGAATTT-AAAGATGCGGTGCAG-CAATTACTGAGCTGCTTCCC 252411 Query 107873 CAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTGCA 107932 ||||| ||| ||||| ||| ||| || || || || | | ||||| | || Sbjct 252410 CAATGCTTTCCTGGCCTCCAAGATGGAGCCAGTTGTGTACGGCGGGATTTCCAGGCTCCA 252351 Query 107933 AGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTC---AGTGCCATGGAAGTACTT 107989 || ||||||||||| || ||||| ||| | ||| ||||||||||| ||| Sbjct 252350 GGCGGACCTGAACTGCATCAAAGAC---CTCGTGGCCTCGGAGGTGCCATGGAAATACGC 252294 Query 107990 ACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAA 108028 | || || || ||| || || ||| | || ||||| Sbjct 252293 CATCAACACCTGTGGGCAGGATTTTCCCCTGAAAACCAA 252255 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 348043428402978