Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Equus_20przewalskii_20[refseq_20GCF_5F000696695.1_202014-06-05] 53,097 sequences; 2,395,954,271 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq23030 141 7e-29 seq5432 116 3e-21 seq5247 105 5e-18 >seq23030 Length=1446 Score = 141 bits (156), Expect = 7e-29 Identities = 170/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 |||||||| | | | |||| |||||| ||| ||||||||| ||||||||||| | Sbjct 735 CCACCTCTGAGACGCAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAC 794 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || ||| | || ||||| || || |||||||| || | || ||| |||||||| || Sbjct 795 AGGGTGCGCCCATCCTCCAGCTGCTTCCCGGCGAAGATGAGCCTCTGCTGGTCGGGGGGG 854 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | |||||||||||| || || ||| || | | | | |||| | ||||||| Sbjct 855 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCACC 914 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATGTTG 45340 |||| ||| || |||||||| ||||| |||||||||||||| ||||| ||| Sbjct 915 TCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCATTTTG 965 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 |||||||| | | | |||| |||||| ||| ||||||||| ||||||||||| | Sbjct 279 CCACCTCTGAGACGCAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAC 338 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || ||| | || ||||| || || |||||||| || | || ||| |||||||| || Sbjct 339 AGGGTGCGCCCATCCTCCAGCTGCTTCCCGGCGAAGATGAGCCTCTGCTGGTCGGGGGGG 398 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | ||||| || ||| || || ||| || | | | | |||| | ||||||| Sbjct 399 ATGCCCTCTTTATCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCACC 458 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 |||| ||| || ||||| |||||||| |||||||| || || ||||| Sbjct 459 TCCAGGGTGATGGTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCAT 505 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 |||||||| | | | |||| |||||| ||| ||||||||| ||||||||||| | Sbjct 507 CCACCTCTGAGACGCAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAC 566 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || ||| | || ||||| || || |||||||| || | || ||| |||||||| || Sbjct 567 AGGGTGCGCCCATCCTCCAGCTGCTTCCCGGCGAAGATGAGCCTCTGCTGGTCGGGGGGG 626 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | ||||| || ||| || || ||| || | | | | |||| | ||||||| Sbjct 627 ATGCCCTCTTTATCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCACC 686 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 |||| ||| || ||||| |||||||| |||||||| || || ||||| Sbjct 687 TCCAGGGTGATGGTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCAT 733 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 || ||||||| | | |||| |||||| || ||| ||||| |||||||| || Sbjct 51 CCGCCTCTCAGGCGCAGCACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAA 110 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || ||| | || ||||| || || || || || || | || ||| |||||||| || Sbjct 111 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGG 170 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | |||||||| ||| || || ||| || | | | | |||| | ||||||| Sbjct 171 ATGCCCTCCTTATCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCACC 230 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 |||| ||| || ||||| |||||||| |||||||| || || ||||| Sbjct 231 TCCAGGGTGATGGTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCAT 277 >seq5432 Length=86301 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 || || ||||| | | |||| |||||| || || ||||| ||||||||||| | Sbjct 81687 CCTCCCCTCAAGCGCAGGACCAGGTGCAGAGTAGATTCTTTCTGGATGTTGTAGTCAGAC 81628 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || ||| | || ||||| || || |||||||| || | || ||| |||||||| || Sbjct 81627 AGGGTGCGCCCATCCTCCAGCTGCTTCCCGGCGAAGATGAGCCTCTGCTGGTCGGGGGGG 81568 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | |||||||||||| || || ||| || | | | | |||| | ||||||| Sbjct 81567 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCACC 81508 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 |||| ||| || ||||| |||||||| |||||||| || || ||||| Sbjct 81507 TCCAGGGTGATGGTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCAT 81461 Score = 84.2 bits (92), Expect = 2e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 |||||||| | | | |||| |||||| ||| ||||||||| ||||||||||| | Sbjct 81459 CCACCTCTGAGACGCAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAC 81400 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || ||| | || ||||| || || |||||||| || | || ||| |||||||| || Sbjct 81399 AGGGTGCGCCCATCCTCCAGCTGCTTCCCGGCGAAGATGAGCCTCTGCTGGTCGGGGGGG 81340 Query 45230 ACACCCTCCTT 45240 | |||||||| Sbjct 81339 ATGCCCTCCTT 81329 >seq5247 Length=92488 Score = 105 bits (116), Expect = 5e-18 Identities = 150/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 ||||||||||| ||| || |||| || |||||||| || ||| | || ||| Sbjct 12486 ACCAAGTGCAGGGTGGAGTCTCTCTGGATATTGTAGTCTGAGAGAGTGCGGCCATCTTCC 12545 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || ||||| ||||| || |||| | || ||||| || || | ||||| ||||| Sbjct 12546 AGCTGTTTGCCGGCAAAAATCAGACATTGCTGGTCAGGTGGGATGCCCTCTTTGTCTTGG 12605 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 ||||| ||||| | | | | |||| | ||| ||||| | ||| || |||||| Sbjct 12606 ATTTTAGCTTTAACATTCTCAATGGTGTCACTGGACTCAACCTCAAGGGTGATGGTCTTG 12665 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATGT 45338 |||||||| |||||||||||||| ||||||| Sbjct 12666 CCCGTCAGGGTCTTCACAAAGATCTGCATGT 12696 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 394819539060037