Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Equus_20przewalskii_20[refseq_20GCF_5F000696695.1_202014-06-05] 53,097 sequences; 2,395,954,271 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq1685 122 8e-23 seq23030 111 1e-19 seq5432 105 6e-18 >seq1685 Length=395008 Score = 122 bits (134), Expect = 8e-23 Identities = 121/157 (77%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 23048 ACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTG 23107 ||||| |||||| || || ||||| ||||| || ||||||||||| || || ||||| Sbjct 374945 ACCTCATCTTTGCTGGTATATTCTACTATTTCTGTGCATAGATTGCTGCATTTGATCGTT 374886 Query 23108 CCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTG 23167 |||| || |||||| || || ||||| || ||||| ||||||||||||||||| || Sbjct 374885 CCCAGGTTCTGCTGGTTACTCTTCCGATTACAGGAATCTTTGTAGAGCATGTACGGGGTA 374826 Query 23168 CCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACA 23204 || ||||| ||| ||||| ||||| || ||||| Sbjct 374825 CCTGTCTCTGTCTGGGACTCAATGATGGCATACCACA 374789 >seq23030 Length=1446 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||| ||||| ||||| || || || |||||| | || || || || | Sbjct 277 ATGCAGATTTTCGTGAAGACCCTGACGGGGAAGACCATCACCCTGGAGGTGGAGCCCAGC 218 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | ||||| | || ||| ||||| ||| | || ||||||||| Sbjct 217 GACACCATCGAGAACGTCAAGGCCAAGATCCAGGATAAGGAGGGCATCCCCCCCGACCAG 158 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | || || || || ||||| ||| ||||||| ||| | ||||| ||| Sbjct 157 CAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAAC 98 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || || ||||| ||||| || || ||||| || | ||||| ||||||| Sbjct 97 ATCCAGAAAGAGTCGACCCTGCACCTGGTGCTGCGCCTGAGAGGCGGTA 49 Score = 87.8 bits (96), Expect = 2e-12 Identities = 151/218 (69%), Gaps = 1/218 (0%) Strand=Plus/Minus Query 31187 TCAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAA 31246 ||||| ||||| || || || ||||| ||||| ||||| || |||||| | || || || Sbjct 966 TCAAA-ATGCAGATCTTTGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAG 908 Query 31247 CCGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCC 31306 || ||||| |||| | ||||| | || ||||||||| ||| | || ||| Sbjct 907 CCCAGCGACACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCC 848 Query 31307 GACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGAT 31366 ||||||||| | || || ||||| || || ||| |||| || || || || Sbjct 847 GACCAGCAGAGGCTCATCTTCGCCGGGAAGCAGCTGGAGGATGGGCGCACCCTGTCTGAC 788 Query 31367 TATAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || ||||| || || || || ||||| || ||||| || Sbjct 787 TACAACATCCAGAAGGAGTCCACTCTGCACCTGGTCCT 750 >seq5432 Length=86301 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||| ||||| ||||| || || || |||||| | || || || || | Sbjct 81461 ATGCAGATTTTCGTGAAGACCCTGACGGGGAAGACCATCACCCTGGAGGTGGAGCCCAGC 81520 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | ||||| | || ||||||||| ||| | || ||||||||| Sbjct 81521 GACACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAG 81580 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | || || ||||| || || ||| |||| || || || || || ||| Sbjct 81581 CAGAGGCTCATCTTCGCCGGGAAGCAGCTGGAGGATGGGCGCACCCTGTCTGACTACAAC 81640 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 || || |||||||| ||||| || ||||| || | ||||||| ||| Sbjct 81641 ATCCAGAAAGAATCTACTCTGCACCTGGTCCTGCGCTTGAGGGGAGGT 81688 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445470539268240