Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Equus_20przewalskii_20[refseq_20GCF_5F000696695.1_202014-06-05] 53,097 sequences; 2,395,954,271 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq7 163 4e-35 seq1685 134 2e-26 seq98 107 3e-18 seq3012 105 9e-18 >seq7 Length=3418943 Score = 163 bits (180), Expect = 4e-35 Identities = 156/200 (78%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 9231 TTCTTATTAGATACTTCCAAAAGCTGTAACAGATGCAAGAACAGATTGATGATATCCAAG 9290 || |||||| | ||||||||| | | ||||| |||| ||| |||||||||||||||||| Sbjct 2576277 TTTTTATTAACTGCTTCCAAAAACCGCAACAGGTGCAGGAATAGATTGATGATATCCAAG 2576218 Query 9291 TAGAAATTGATAGAGGCTAACACATAGTCTTCAGGCGAGAGCTTATGTATTAGTGAGTGC 9350 |||| | || | || || ||||| || || || || ||| ||| || || ||||| Sbjct 2576217 TAGAGGTCAATGGCAGCAAATACATACTCCTCGGGTGACAGCCGATGCATCAGCGAGTGT 2576158 Query 9351 GTGTCATAGATAATGAATCCGCAGAATACAAGGGCCCCAAAAGCAGACAGGACCAGCTCC 9410 |||||||||| ||||||||| ||||| | ||||||||| | ||||| | ||||| |||| Sbjct 2576157 GTGTCATAGACAATGAATCCACAGAAAAGAAGGGCCCCTACAGCAGCGATGACCAACTCC 2576098 Query 9411 ACTGTTTCACTTTGCACAAA 9430 ||||| ||||| || | ||| Sbjct 2576097 ACTGTCTCACTGTGAAAAAA 2576078 Score = 134 bits (148), Expect = 2e-26 Identities = 101/119 (85%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 9480 CCTGCTCCAAGTTTACTGAAATCTCTCTTTGATTGTAGAGTATATGCAGTCAGAGCAAGA 9539 || ||||||| ||| |||||||||||||| ||||||||||| ||| |||||| | ||||| Sbjct 2569649 CCCGCTCCAAATTTGCTGAAATCTCTCTTAGATTGTAGAGTGTATACAGTCAAACCAAGA 2569590 Query 9540 AACACTGCAGTAGTCAGCATGAAAGCTTGCATAACGACATGCACATCATAGAAAGTAAC 9598 || || || |||||||| | ||||||||||| ||| | || ||||||||||||||||| Sbjct 2569589 AATACCGCGGTAGTCAGTACGAAAGCTTGCAGAACAATATATACATCATAGAAAGTAAC 2569531 Score = 98.7 bits (108), Expect = 1e-15 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 9847 CCATTCGTATGTGCACACTGGCAGACGCCACCGAGCTGCCATAGTTGAAGTCGTCCTCGA 9906 |||| || |||||||| ||||| || ||||| ||||||||||||||||||||||||||| Sbjct 2553065 CCATGCGGATGTGCACGCTGGCCGAGGCCACGCAGCTGCCATAGTTGAAGTCGTCCTCGA 2553006 Query 9907 TGGAGGAGCACGCGTAG 9923 |||||||||| | |||| Sbjct 2553005 TGGAGGAGCAGGGGTAG 2552989 >seq1685 Length=395008 Score = 134 bits (148), Expect = 2e-26 Identities = 112/137 (82%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 65181 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 65240 || ||||||||||| ||||| ||||| |||||||| || || |||||||| ||||| | Sbjct 383076 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTGCTGGTATAAGGTTCAATG 383017 Query 65241 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 65300 |||||||||||||||| ||| ||||||||||| ||||| ||||| || || | | |||| Sbjct 383016 GACTCATTATTTCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAA 382957 Query 65301 CTATTTCTAAGACCGTA 65317 || ||||| | ||| || Sbjct 382956 CTGTTTCTTACACCATA 382940 Score = 100 bits (110), Expect = 4e-16 Identities = 136/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 65419 CATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGT 65478 |||| || || ||||| || |||| || | || ||||| || || || || || || | Sbjct 378220 CATAGGTTTCATATGGGCCATCCTCCTTGGACAGGTCACAGCTGGCTTCCAAGGCTCCAT 378161 Query 65479 AATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGAT 65538 ||||||||||||| ||||| | |||||| || || || || | || ||||| |||| Sbjct 378160 AATAAATGGTTTCAAAGATTTGCTTATTCAGTAACTGGGCCTCTGGACTCTCAAAAGGAT 378101 Query 65539 AATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 65598 | | | |||||||| || ||||| | ||||| || ||||| || || || | ||| | Sbjct 378100 ACCTCATCAGAATAAAAGCATCTGCCAGACCTTGTACCCCAATCCCAATGGGGCGATGGC 378041 Query 65599 TCTTATTAGA 65608 ||||| || Sbjct 378040 GTTTATTTGA 378031 Score = 96.9 bits (106), Expect = 5e-15 Identities = 104/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 66056 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCT 66115 || |||||||||||| |||||||| ||||||||||| || | || | || |||| | Sbjct 373329 CTCCACTCGTTTCATGAAGAGATCCGGAATCCAAAGGGCAAAGAAAAGGTCCCTGGCACG 373270 Query 66116 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCA 66175 || || || |||||||| ||||| || | |||||||||| | | || || ||||||| Sbjct 373269 CTGCTCTTCCTTTCCTGTGTTCTTCTTTAAATCGAGGAACTCAAAGATGTCTAAATGCCA 373210 Query 66176 CGGTTCCAAGTATATGGC 66193 || |||| ||| || || Sbjct 373209 AGGCTCCAGGTAAATAGC 373192 Score = 93.3 bits (102), Expect = 6e-14 Identities = 120/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 66799 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAA 66858 |||| || | ||| |||||||||||||| | ||| || || || || || || || | | Sbjct 361307 CACTGAACACTTTCTTTGTTTCTTTGTGCAAATTAGAGACAGCAATCCTTGCTGCCAGGA 361248 Query 66859 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 66918 | ||||| || || || | ||||| | || || ||| |||| || |||| ||| || | Sbjct 361247 TAGCATAGTCAGGGTGCTTAGTAGTCAAGGTCGCAGCTGTTTCAGCAGCCAAAGTATCTA 361188 Query 66919 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 66964 ||| || || || || ||| | |||| |||||||| || ||||| Sbjct 361187 GTTCCACGGTAGTGACCCCACTGTATAAGCCTTGGATTACTTTCAT 361142 >seq98 Length=1799927 Score = 107 bits (118), Expect = 3e-18 Identities = 95/119 (80%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 36182 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 36241 || ||||| || || | ||| |||||||| |||||||| ||||| || || | || || Sbjct 807443 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATAAGACCTCTTTTCTTT 807502 Query 36242 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGC 36300 ||||| ||||| | ||||| ||||| || ||||||||||||||||| || |||||||| Sbjct 807503 AGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGGC 807561 Score = 93.3 bits (102), Expect = 6e-14 Identities = 86/109 (79%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 36542 AAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAA 36601 |||||||||||||| ||||| ||||||||||||||||| || || ||||| |||||| Sbjct 813836 AAATTTTCATTCACAATTCCATCACTGGCTGCAAAAAAGGCTAAGACATGAGAGATAAAA 813895 Query 36602 TATTTTTCGTTTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATA 36650 || || || | || ||| || || ||||||| | || ||| || |||| Sbjct 813896 TACTTCTCATCTGATGTAAGCTTGTTCCAATGAGGGAGATCCTTGGATA 813944 >seq3012 Length=223438 Score = 105 bits (116), Expect = 9e-18 Identities = 256/386 (66%), Gaps = 4/386 (1%) Strand=Plus/Plus Query 36347 GCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGttt 36406 |||| || ||||||| | |||||| ||||||| || |||||||| |||| | || Sbjct 76045 GCCCTGTCAGCCTTCTCT---ACACAAAGCATTGTTTCAATAGCATTGAAGACAAAGGCC 76101 Query 36407 ttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATG 36466 | || || | |||||||| | || |||| | ||||| || ||||| |||| | | Sbjct 76102 TCCTCTTTGCAATCTTTAATGCAAGTGTCAACAAGGAGACTCTATATTTCAGAATATAAG 76161 Query 36467 TTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTA 36526 || || ||| | |||||| || ||||||| | || || ||||||||||||| || | Sbjct 76162 TTGTCCATGTCACCTTGAAAGCCACAGAAACACATTGCTTCTGTAATCTGTACTTTTGGA 76221 Query 36527 CAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAAT 36586 | |||| | | | |||||| | ||| ||||| ||||||| || |||| Sbjct 76222 CGAAATTGCAGCACCAGGCTTTCATATCCAGCTCCATCACTTGCTGCAACGAAAGCCAGA 76281 Query 36587 ACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGTTTATTCCAATCATTGATATCTTTA 36646 | | || ||||| | | || || | || ||||| | | || || || Sbjct 76282 GCCCGAGATACAAAATCTCTCTCCACAGGCTTCAG-GGCTTCCAGTGCTGAATGTCCTTG 76340 Query 36647 GATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAG 36706 || ||| || || || |||||||||| || ||||| || || | | ||| | ||| Sbjct 76341 GAGTGATCTACCTCCTCAGCTGTCCAAAAGGAAGCCTCAGCTTTCTGGTCCATCTGCCAA 76400 Query 36707 ATGTCATGATATTGAATTGGAAAAAT 36732 ||| || |||||| | |||||||| Sbjct 76401 ATGCCACGATATTCGAGAGGAAAAAT 76426 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657735962485480