Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Equus_20przewalskii_20[refseq_20GCF_5F000696695.1_202014-06-05] 53,097 sequences; 2,395,954,271 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq235 159 5e-35 seq3369 145 1e-30 seq3447 138 2e-28 seq1247 138 2e-28 seq2954 129 9e-26 seq5274 111 2e-20 >seq235 Length=1264378 Score = 159 bits (176), Expect = 5e-35 Identities = 200/272 (74%), Gaps = 2/272 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTC-GAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||||||||| || |||| | |||| |||| ||||||||||| ||||||||||| || | Sbjct 24155 CGCTAAGCGGCACCGCAAAG-TCTTGAGAGACAACATCCAAGGCATCACCAAGCCCGCCA 24097 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| ||||| ||||| ||||| ||||||||||| |||| || | | || || |||| Sbjct 24096 TCCGGCGTCTTGCTCGGCGTGGGGGAGTCAAGCGGATCTCGGGCCTCATTTACGAGGAGA 24037 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | ||| |||||| | ||||| ||| ||| |||| || || || ||| || | Sbjct 24036 CCCGGGGTGTGTTGAAGGTGTTCCTGGAGAACGTCATCCGCGACGCGGTCACCTACACGG 23977 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || || ||||| ||||| ||||||| | ||||| || | || || || | Sbjct 23976 AGCACGCCAAGCGCAAGACGGTCACTGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGG 23917 Query 16671 GCCGTAAGATTTATGGTTTTGGAAGTTAATCT 16702 |||| | | || || || ||| | ||| || Sbjct 23916 GCCGCACCCTGTACGGCTTCGGAGGCTAAGCT 23885 >seq3369 Length=193061 Score = 145 bits (160), Expect = 1e-30 Identities = 180/244 (74%), Gaps = 2/244 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||||||||| || |||| | |||| || || |||||||| || ||||||||||| || | Sbjct 149222 CGCTAAGCGCCACCGCA-AGGTCTTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCA 149280 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| |||||||| || ||||| || |||||||| |||| || | |||| || |||| Sbjct 149281 TCCGGCGTCTGGCCCGGCGTGGCGGCGTCAAGCGCATCTCCGGCCTCATCTACGAGGAGA 149340 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | || | ||| ||||||| | | ||| |||| || || || ||| |||| Sbjct 149341 CCCGCGGGGTGCTCAAGGTCTTCCTGGAAAACGTGATCCGGGACGCGGTCACCTACACCG 149400 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || || ||||| |||||| |||||||| | || || || | || || || | Sbjct 149401 AGCACGCCAAGCGCAAGACAGTCACCGCCATGGATGTTGTTTACGCGCTCAAGCGCCAGG 149460 Query 16671 GCCG 16674 | || Sbjct 149461 GGCG 149464 Score = 143 bits (158), Expect = 4e-30 Identities = 179/243 (74%), Gaps = 2/243 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 |||||||| ||||||| | | || || || |||||||| || ||||||||||| || || Sbjct 168155 GCTAAGCGCCATCGCA-AGGTGTTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 168213 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| |||||||| || ||||| || |||||||| |||| || | |||| || |||| Sbjct 168214 CCGGCGTCTGGCCCGGCGTGGGGGTGTCAAGCGCATCTCCGGTCTCATCTACGAGGAGAC 168273 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||| |||| || ||| ||| |||| || || || ||| ||||| Sbjct 168274 CCGCGGGGTGCTCAAGGTCTTTCTGGAGAACGTCATCCGGGACGCGGTCACCTACACCGA 168333 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| |||||| ||||||| | ||||| || | || || || || Sbjct 168334 GCACGCCAAGCGCAAGACGGTCACCGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGG 168393 Query 16672 CCG 16674 || Sbjct 168394 GCG 168396 Score = 134 bits (148), Expect = 2e-27 Identities = 193/272 (71%), Gaps = 0/272 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| | || || || |||||||| || ||||||||||| || || Sbjct 181934 CGCCAAGCGCCACCGCAAAGTCCTCCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 181875 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| |||||||| || || || || || ||||| | ||||| | |||| || |||| Sbjct 181874 CCGGCGTCTGGCCCGCCGCGGCGGCGTTAAGCGAATTTCTGGTCTCATCTACGAGGAGAC 181815 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||| | ||||| ||| ||| || | || || || ||| ||||| Sbjct 181814 CCGCGGGGTGCTCAAGGTTTTCCTGGAGAACGTGATTCGAGACGCGGTCACCTACACCGA 181755 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| |||||| ||||||| | ||||| || | || || || || Sbjct 181754 GCACGCCAAGCGCAAGACGGTCACCGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGG 181695 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCTT 16703 || | | ||||| || ||| | ||| ||| Sbjct 181694 GCGCACTCTCTATGGCTTCGGAGGCTAAGCTT 181663 Score = 132 bits (146), Expect = 8e-27 Identities = 175/243 (72%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 |||||||||||| || | | || || ||||||||||| || |||||||| || || || Sbjct 47100 CGCTAAGCGTCACCGAAAAGTGCTGCGCGATAACATCCAGGGCATCACCAAACCCGCCAT 47159 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 | |||||||| || || || || |||||||| |||| || | |||| || |||| Sbjct 47160 TAGACGTCTGGCCCGGCGCGGAGGTGTCAAGCGCATCTCCGGCCTCATCTACGAGGAGAC 47219 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||| ||||||| ||| ||| |||| || || || ||| ||||| Sbjct 47220 CCGCGGGGTGCTCAAGGTCTTCCTAGAGAACGTGATCCGGGACGCGGTCACCTACACCGA 47279 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| || ||| ||||||| | ||||| || | || || || || Sbjct 47280 GCACGCCAAGCGCAAGACGGTTACCGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGG 47339 Query 16672 CCG 16674 || Sbjct 47340 GCG 47342 Score = 96.9 bits (106), Expect = 5e-16 Identities = 95/123 (77%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| ||||||| || || || |||||||| || ||||||||||| || || Sbjct 129910 CGCCAAGCGCCATCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 129851 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| |||||||| || ||||| || |||||||| ||||||| | |||| || |||| Sbjct 129850 CCGGCGTCTGGCCCGGCGTGGGGGTGTCAAGCGCATCTCTGGTCTCATCTACGAGGAGAC 129791 Query 16552 TCG 16554 ||| Sbjct 129790 TCG 129788 Score = 91.5 bits (100), Expect = 2e-14 Identities = 136/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576 |||||||| |||| || | |||| || |||| ||| | || | ||| ||||||| Sbjct 129771 GTCAAGCGCATCTCCGGCCTCATCTACGAGGAGACTCGCGGGGTGCTCAAGGTCTTCCTG 129712 Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636 ||| ||| |||| || || || ||| ||||||||||| || || ||||| |||||| Sbjct 129711 GAGAACGTGATCCGGGACGCGGTCACCTACACCGAGCACGCCAAGCGCAAGACGGTCACC 129652 Query 16637 TCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGT 16696 | ||||| | ||||| || | ||||| || || || | |||| || || || || Sbjct 129651 GCGATGGACGTGGTCTACGCGCTCAAACGCCAGGGGCGCACTCTTTACGGCTTCGGCGGT 129592 Query 16697 TAATCTTCTAATC 16709 |||| || | ||| Sbjct 129591 TAATTTTTTCATC 129579 >seq3447 Length=186104 Score = 138 bits (152), Expect = 2e-28 Identities = 174/239 (73%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||||||||| || ||||| || ||||| || ||||| Sbjct 64461 CTGCGGGACAACATCCAGGGCATCACCAAGCCCGCCATCCGGCGCCTGGCCCGGCGTGGC 64520 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || |||||||| |||| || | |||| || |||| ||| | || | ||| ||||| Sbjct 64521 GGCGTCAAGCGCATCTCCGGCCTCATCTACGAGGAGACTCGCGGGGTGCTCAAGGTCTTC 64580 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || ||| ||| |||| || || || ||| ||||||||||| || || ||||| ||| Sbjct 64581 CTGGAGAACGTCATCCGGGACGCGGTCACCTACACCGAGCACGCCAAGCGCAAGACGGTC 64640 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 ||| ||||||| | ||||| || | || || || || || | |||| || || || Sbjct 64641 ACCGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGGGCGCACCCTTTACGGCTTCGG 64699 Score = 138 bits (152), Expect = 2e-28 Identities = 163/221 (74%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||||||||| || ||||| || ||||| || ||||| Sbjct 72448 CTGCGGGACAACATCCAGGGCATCACCAAGCCCGCCATCCGGCGCCTGGCCCGGCGTGGC 72389 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || |||||||| |||| || | |||| || |||| ||| | || | ||| ||||| Sbjct 72388 GGCGTCAAGCGCATCTCCGGCCTCATCTACGAGGAGACTCGCGGGGTGCTCAAGGTCTTC 72329 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || ||| ||| |||| || || || ||| ||||||||||| || || ||||| ||| Sbjct 72328 CTGGAGAACGTCATCCGGGACGCGGTCACCTACACCGAGCACGCCAAGCGCAAGACGGTC 72269 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 ||| ||||||| | ||||| || | || || || || || Sbjct 72268 ACCGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGGGCG 72228 Score = 129 bits (142), Expect = 9e-26 Identities = 161/221 (73%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||||||||| || ||||| || ||||| | || || Sbjct 30635 CTGCGGGACAACATCCAGGGCATCACCAAGCCCGCCATCCGGCGCCTGGCCAGACGCGGC 30694 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || |||||||| |||| || | |||| || |||| ||| | || | ||| ||||| Sbjct 30695 GGCGTCAAGCGCATCTCCGGCCTCATCTACGAGGAGACTCGCGGGGTGCTCAAGGTCTTC 30754 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || ||| ||| |||| || || || ||| ||||||||||| || || ||||| ||| Sbjct 30755 CTGGAGAACGTGATCCGGGACGCGGTCACCTACACCGAGCACGCCAAGCGCAAGACGGTC 30814 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 ||| ||||||| | ||||| || | || || || || || Sbjct 30815 ACCGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGGGCG 30855 Score = 80.6 bits (88), Expect = 4e-11 Identities = 147/213 (69%), Gaps = 3/213 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAA-GCCAGCTAT 16491 |||||||| || || | || || || |||||||| || | ||| || ||| || || Sbjct 83804 GCTAAGCGCCACCGTAAGGTGCTGCGGGACAACATCCAGGGCACCACTAAAGCCTGCCAT 83745 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 | | |||||||| || || | ||| ||||| ||| || | |||| | || Sbjct 83744 CTGGCGTCTGGCCCGGCGCAGC--AGTTAAGCGCACCTCGGGCCTCATCTACGGGAAGGC 83687 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||| ||||||| ||| || ||||| |||||| || ||| ||||| Sbjct 83686 CCGCGGGGTGCTTAAGGTCTTCCTGGAGAAGGTGATCCAGGATGCTGTCAGCTACACCGA 83627 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGA 16644 |||||| || ||||| || |||||| | ||||| Sbjct 83626 GCACGCCAAGCGTAAAACGGTCACCGCTATGGA 83594 >seq1247 Length=506769 Score = 138 bits (152), Expect = 2e-28 Identities = 181/251 (72%), Gaps = 0/251 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||||||||| || ||||| || ||||| || || || Sbjct 26330 CTGCGGGACAACATCCAGGGCATCACCAAGCCTGCCATCCGGCGCCTGGCCCGCCGCGGG 26271 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || |||||||| ||||||| | |||| ||||||| |||| ||| | ||| | ||| Sbjct 26270 GGCGTCAAGCGCATCTCTGGCCTCATCTACGAAGAGACGCGTGGTGTGCTAAAGGTGTTC 26211 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || ||| || |||| ||| || || || ||||||||||| || || ||||||||| Sbjct 26210 CTGGAGAATGTGATCCGTGACGCCGTCACTTACACCGAGCACGCCAAGCGCAAGACTGTC 26151 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGA 16693 ||| | ||||| | || || || | || || || || || | | || || ||||| Sbjct 26150 ACCGCTATGGACGTGGTTTACGCGCTCAAGCGCCAGGGGCGCACTCTCTACGGCTTTGGC 26091 Query 16694 AGTTAATCTTC 16704 | ||| |||| Sbjct 26090 GGCTAAGCTTC 26080 >seq2954 Length=228220 Score = 129 bits (142), Expect = 9e-26 Identities = 172/239 (72%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||||||||| || || || |||||||| || ||||| Sbjct 119719 CTGCGGGACAACATCCAGGGCATCACCAAGCCTGCCATTCGGCGTCTGGCCCGGCGTGGG 119778 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || |||||||| |||| || | |||| || |||| || | || | ||| ||||| Sbjct 119779 GGTGTCAAGCGCATCTCCGGTCTCATCTACGAGGAGACCCGCGGGGTGCTCAAGGTCTTC 119838 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 | ||| || |||| || || || ||| ||||||||||| || || ||||| ||| Sbjct 119839 TTGGAGAATGTGATCCGGGACGCGGTCACCTACACCGAGCACGCCAAGCGCAAGACGGTC 119898 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 ||| ||||||| | ||||| || | || || || || || | ||||||| || || Sbjct 119899 ACCGCCATGGACGTGGTCTACGCTCTCAAGCGCCAGGGGCGCACTCTTTATGGCTTCGG 119957 >seq5274 Length=91934 Score = 111 bits (122), Expect = 2e-20 Identities = 154/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 |||||||| || || | | |||| || ||||||||||| || ||||||||||| || || Sbjct 80357 GCTAAGCGCCACCGGA-AGGTCTTGCGGGATAACATCCAGGGCATCACCAAGCCGGCCAT 80415 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 | | |||||||| || ||||| || || ||||| | ||||| | |||| || |||| Sbjct 80416 CAGGCGTCTGGCCCGCCGTGGCGGCGTTAAGCGCATTTCTGGCCTTATCTACGAGGAGAC 80475 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | || | ||||| | | ||| |||| || || || ||| ||||| Sbjct 80476 CCGCGGGGTGCTCAAAGTGTTCCTGGAAAACGTGATCCGAGACGCGGTCACCTACACCGA 80535 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGA 16644 |||||| || || ||||| || ||| | ||||| Sbjct 80536 GCACGCCAAGCGCAAGACCGTTACCGCTATGGA 80568 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79026653041221