Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Equus_20przewalskii_20[refseq_20GCF_5F000696695.1_202014-06-05] 53,097 sequences; 2,395,954,271 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq1685 96.9 9e-15 seq2188 86.0 2e-11 >seq1685 Length=395008 Score = 96.9 bits (106), Expect = 9e-15 Identities = 113/153 (74%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 364111 GCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATG 364170 || ||| |||| |||| ||||||||| || || |||| |||||||| || || || ||| Sbjct 374779 GCTCAGCAGCTGTGGTATGCCATCATTGAGTCCCAGACAGAGACAGGTACCCCGTACATG 374838 Query 364171 TTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAG 364230 | ||||||||||| || || || ||| ||||||||| |||| || || || | Sbjct 374839 CTCTACAAAGATTCCTGTAATCGGAAGAGTAACCAGCAGAACCTGGGAACGATCAAATGC 374898 Query 364231 AGCAACCTATGTACCGAGATTATTGAATACACC 364263 ||||| ||||| || || || | ||||| ||| Sbjct 374899 AGCAATCTATGCACAGAAATAGTAGAATATACC 374931 Score = 84.2 bits (92), Expect = 6e-11 Identities = 134/191 (70%), Gaps = 6/191 (3%) Strand=Plus/Plus Query 364951 CAGAACATTCCAGGATTTCCAGAAGATCTGAAGCCTATTTACAAAACCGTATGGGAAATT 365010 |||| ||| | || | |||| || || ||||||| |||| || || || ||||||||| Sbjct 385115 CAGAGCATACAAGAAATTCCTGATGACCTGAAGCAACTTTATAAGACTGTGTGGGAAATT 385174 Query 365011 TCCATGCGAAC---TCTCATTGATATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGC 365067 || | ||| ||||| | ||||| ||||| | || |||||||| ||| ||| Sbjct 385175 TCTCAGAAAACCATTCTCA---AGATGGCAGCCGAGAGAGGCGCTTTTATTGATCAAAGC 385231 Query 365068 CAGTCGTTTAACGTATTCATGACTCAGCCAACCTCCGCCAAGCTTACATCCATGCATTTC 365127 ||||| || ||| | ||| || |||| | || | ||| || || |||||| ||| Sbjct 385232 CAGTCTTTGAACATCCACATTGCTGAGCCTAACTATGGCAAACTCACTAGCATGCACTTC 385291 Query 365128 TACGGGTGGAA 365138 ||||| ||||| Sbjct 385292 TACGGCTGGAA 385302 >seq2188 Length=317451 Score = 86.0 bits (94), Expect = 2e-11 Identities = 118/159 (74%), Gaps = 6/159 (4%) Strand=Plus/Plus Query 111390 ACAAATGCAAATGAACTTGCA-GCAAAAAATGTAAAAATTTGGGATGGAAATGGATCACG 111448 |||||||| |||||||| | |||| | || ||||| ||||||| ||||| || || Sbjct 252394 ACAAATGCTAATGAACTGTCTTGCAAGGGA-GTGAAAATCTGGGATGCCAATGGGTCCCG 252452 Query 111449 TGACTTTCTAGATTCAGT-TGGTCTTGTC-GACAACGAAGAAGGTGATCTCGGACCAGTT 111506 ||||| | || ||| ||| || || | || |||||||| ||| | || |||||| Sbjct 252453 AGACTTCTTGGA--CAGCCTGGGATTCTCCGCCAGAGAAGAAGGGGATTTAGGCCCAGTT 252510 Query 111507 TACGGATTTCAATGGCGCCACTTTGGTGCAGACTACAAA 111545 ||||| ||||| ||| | || ||||| ||||| |||||| Sbjct 252511 TACGGCTTTCAGTGGAGGCATTTTGGGGCAGAATACAAA 252549 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1302466921621854