Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Equus_20przewalskii_20[refseq_20GCF_5F000696695.1_202014-06-05] 53,097 sequences; 2,395,954,271 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq23030 87.8 2e-12 seq5432 86.0 5e-12 >seq23030 Length=1446 Score = 87.8 bits (96), Expect = 2e-12 Identities = 116/161 (72%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 23987 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGC 24046 ||||||||| | ||||| || || | || || || | || ||| | || || ||| | Sbjct 965 CAAAATGCAGATCTTTGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCC 906 Query 24047 CAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGA 24106 || ||||||||||||| | ||||| ||||| ||||| || ||||| || ||||| Sbjct 905 CAGCGACACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGA 846 Query 24107 TCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATG 24147 || ||||| || || | || ||| ||||| || || |||| Sbjct 845 CCAGCAGAGGCTCATCTTCGCCGGGAAGCAGCTGGAGGATG 805 >seq5432 Length=86301 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || | || || || | || ||| | || || ||| ||| | Sbjct 81461 ATGCAGATTTTCGTGAAGACCCTGACGGGGAAGACCATCACCCTGGAGGTGGAGCCCAGC 81520 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||||||| | ||||| ||||| ||||| || ||||| || ||||| || Sbjct 81521 GACACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAG 81580 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| || || | || ||| ||||| || || |||| | | | | || || ||| Sbjct 81581 CAGAGGCTCATCTTCGCCGGGAAGCAGCTGGAGGATGGGCGCACCCTGTCTGACTACAAC 81640 Query 24171 ATTCAAAAAGAATCTAC 24187 || || ||||||||||| Sbjct 81641 ATCCAGAAAGAATCTAC 81657 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429657779950035