Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Equus_20przewalskii_20[refseq_20GCF_5F000696695.1_202014-06-05] 53,097 sequences; 2,395,954,271 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq7165 127 1e-24 seq26482 109 4e-19 seq9836 104 2e-17 seq38 96.9 2e-15 seq355 86.0 4e-12 seq23030 84.2 1e-11 >seq7165 Length=42025 Score = 127 bits (140), Expect = 1e-24 Identities = 85/95 (89%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| |||||||| ||||| || |||||||| Sbjct 29487 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGT 29428 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 29427 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 29393 Score = 123 bits (136), Expect = 2e-23 Identities = 85/96 (89%), Gaps = 5/96 (5%) Strand=Plus/Minus Query 25901 TAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCG 25955 || ||||||||||||||||||||||||||| |||||||| ||||| || ||||||| Sbjct 29382 TACGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCG 29323 Query 25956 TTAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 || |||| |||||||||||||||||||||||||||| Sbjct 29322 TTCATCCATTCATGCGCGTCACTAATTAGATGACGA 29287 >seq26482 Length=1300 Score = 109 bits (120), Expect = 4e-19 Identities = 81/95 (85%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||| ||||||||||||||||||| |||| || ||||| || |||||| | Sbjct 762 AAGCCCGTTGCCTTGGCTGTGGTTTCGCTGGATAACAGTTAGGGACAGTGGGAATCTCCT 821 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 822 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 856 >seq9836 Length=11799 Score = 104 bits (114), Expect = 2e-17 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| Sbjct 8701 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTACTTGTTGACTATCGGTCTCGT 8760 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||||| Sbjct 8761 GCCGGTATTTAGCCTTA 8777 >seq38 Length=2414427 Score = 96.9 bits (106), Expect = 2e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTC 38164 |||||| | |||||||||| ||||||||| | ||||| ||||||||| || || | || Sbjct 980149 CAACACAAGATGAAGAGTGGATTCCTTTTGATTGTTGTAGTCAGACAAAGCATGTCCATC 980090 Query 38165 GTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224 | | ||| || || ||||| || || | ||| ||||| | || | ||||| | || Sbjct 980089 TTTCATTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCGTATC 980030 Query 38225 CATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGT 38284 | || || ||| | ||| | | ||||| |||||| || | || || || Sbjct 980029 CTGGATCTTGGCCTTTATATTTTCTATTGTATCCTAGGGTTCAACCTCGAGAGTGATGGT 979970 Query 38285 TTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 || ||||| | |||||||||||| |||||||| || Sbjct 979969 CTTCCCCGTAAGGGTTTTCACGAAAATCTGCATCTT 979934 >seq355 Length=1043905 Score = 86.0 bits (94), Expect = 4e-12 Identities = 70/85 (82%), Gaps = 5/85 (6%) Strand=Plus/Plus Query 25912 CCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGTTAATCCTTTC 25966 ||||||||||||||| ||| |||||||| ||||| || |||| ||| |||| ||| Sbjct 467387 CCTTGGCTGTGGTTTTGCTGGATAGTAGGTAGGGACAGTGGGAATCGTGTTCATCCATTC 467446 Query 25967 ATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||| ||||||||||| Sbjct 467447 ATGCGCATCACTACTTAGATGACGA 467471 >seq23030 Length=1446 Score = 84.2 bits (92), Expect = 1e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||| ||||||| |||| ||||| || || || ||| || || || |||||||||| Sbjct 49 TACCGCCTCTCAGGCGCAGCACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAG 108 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | | | || | || || | || || || ||||| || || | || || |||| || Sbjct 109 AAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGG 168 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| ||| || || ||| || || ||| || |||| || || || | || | Sbjct 169 GGATGCCCTCCTTATCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCA 228 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || | || || || || ||||||| ||| |||||||| |||||||| Sbjct 229 CCTCCAGGGTGATGGTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCAT 277 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334730449072607