Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Equus_20przewalskii_20[refseq_20GCF_5F000696695.1_202014-06-05] 53,097 sequences; 2,395,954,271 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq5247 118 9e-22 >seq5247 Length=92488 Score = 118 bits (130), Expect = 9e-22 Identities = 157/215 (73%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| |||| || || ||||||| | || || ||||| | Sbjct 12694 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTTGAGTCCAGT 12635 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| || ||| | || |||| |||| || |||||||| || || ||||||||| Sbjct 12634 GACACCATTGAG--AATGTTAAAGCTAAAATCCAA-GACAAAGAGGGCATCCCACCTGAC 12578 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || || | | ||||||||||||||||| | ||||||| |||||| | || ||| Sbjct 12577 CAGCAATGTCTGATTTTTGCCGGCAAACAGCTGGAAGATGGCCGCACTCTCTCAGACTAC 12518 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||| || | ||| ||||| || || || ||||| Sbjct 12517 AATATCCAGAGAGACTCCACCCTGCACTTGGTGCT 12483 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433047584920055