Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Equus_20przewalskii_20[refseq_20GCF_5F000696695.1_202014-06-05] 53,097 sequences; 2,395,954,271 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq5247 120 3e-22 seq5432 107 2e-18 seq23030 100 2e-16 seq1544 87.8 2e-12 >seq5247 Length=92488 Score = 120 bits (132), Expect = 3e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || | || || || || |||| ||||| || || ||| Sbjct 12694 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTTGAGTCCAGT 12635 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || | ||| ||||| |||||||| ||||| || ||||| || || Sbjct 12634 GACACCATTGAGAATGTTAAAGCTAAAATCCAAGACAAAGAGGGCATCCCACCTGACCAG 12575 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| |||| || ||||||||||||||| | || ||| |||||| |||| || ||||| Sbjct 12574 CAATGTCTGATTTTTGCCGGCAAACAGCTGGAAGATGGCCGCACTCTCTCAGACTACAAT 12515 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGT 22427 || || | ||| |||||| | || || || Sbjct 12514 ATCCAGAGAGACTCCACCCTGCACTTGGT 12486 >seq5432 Length=86301 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||| ||||| || || || | || || || || |||| || || ||||| ||| Sbjct 81460 GATGCAGATTTTCGTGAAGACCCTGACGGGGAAGACCATCACCCTGGAGGTGGAGCCCAG 81519 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 ||| ||| | || | |||| || || || ||||||||||| || || ||||| || Sbjct 81520 CGACACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCA 81579 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 || | || || || ||||| || ||| | |||||| |||||| | || || ||||| Sbjct 81580 GCAGAGGCTCATCTTCGCCGGGAAGCAGCTGGAGGATGGGCGCACCCTGTCTGACTACAA 81639 Query 22398 CATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||| || |||||||| || | || | || |||| ||| | |||||| Sbjct 81640 CATCCAGAAAGAATCTACTCTGCACCTGGTCCTGCGCTTGAGGGGAGGT 81688 >seq23030 Length=1446 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 22213 GTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAA 22272 || || ||||| || ||||| || || | ||||| || || |||| || || ||||| Sbjct 967 GTCAAAATGCAGATCTTTGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAG 908 Query 22273 ACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCC 22332 ||| ||| ||| | || | |||| || || || ||||||||||| || || ||| Sbjct 907 CCCAGCGACACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCC 848 Query 22333 GATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGAT 22392 || || || | || || || ||||| || ||| | |||||| |||||| | || || Sbjct 847 GACCAGCAGAGGCTCATCTTCGCCGGGAAGCAGCTGGAGGATGGGCGCACCCTGTCTGAC 788 Query 22393 TACAACATTCAAAAAGAATCCAC 22415 |||||||| || || || ||||| Sbjct 787 TACAACATCCAGAAGGAGTCCAC 765 Score = 98.7 bits (108), Expect = 8e-16 Identities = 141/199 (71%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||| ||||| || || || | || || || || |||| || || ||||| ||| Sbjct 278 GATGCAGATTTTCGTGAAGACCCTGACGGGGAAGACCATCACCCTGGAGGTGGAGCCCAG 219 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 ||| ||| | || | |||| || || || || |||||||| || || ||||| || Sbjct 218 CGACACCATCGAGAACGTCAAGGCCAAGATCCAGGATAAGGAGGGCATCCCCCCCGACCA 159 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 || | || || ||||| ||||| ||| | || ||| |||||| | || |||||||| Sbjct 158 GCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAA 99 Query 22398 CATTCAAAAAGAATCCACC 22416 ||| || ||||| || ||| Sbjct 98 CATCCAGAAAGAGTCGACC 80 >seq1544 Length=425498 Score = 87.8 bits (96), Expect = 2e-12 Identities = 135/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 22217 AGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCA 22276 ||||||| || ||||| | || | | || || || ||||||||||||| | ||| Sbjct 6094 AGATGCAGATCTTTGTGGAGACCCTGATGGGGAAGACCATCACTCTTGAAGTCCAGCCCA 6035 Query 22277 CCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATC 22336 || ||| || || ||||| |||| |||||||||||||| || | ||||| | Sbjct 6034 GTGACACCACTGAGAATGTCAAAGCTAAAACCCAAGACAAGGAGGGCATCCTGCCCGACC 5975 Query 22337 AACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396 | || |||| | |||| ||||||||| |||||||| || ||| | | || |||| Sbjct 5974 AGCAGTGTCTGGTTTTTGTGGGCAAACAGCTAGAGGATGGCCTCACTCTTACAGAGTACA 5915 Query 22397 ACATTCAAAAAGA 22409 | || || ||||| Sbjct 5914 ATATCCAGAAAGA 5902 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419456385747805