Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Equus_20przewalskii_20[refseq_20GCF_5F000696695.1_202014-06-05] 53,097 sequences; 2,395,954,271 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq193 174 2e-38 seq47 109 8e-19 >seq193 Length=1367531 Score = 174 bits (192), Expect = 2e-38 Identities = 219/301 (73%), Gaps = 0/301 (0%) Strand=Plus/Minus Query 8875 AACTCGGAACGCGGCCAACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGT 8934 ||| | ||| || | || ||||| |||||||| || || ||||| |||||||| | Sbjct 67728 AACACTGAAGGCAGTAAAAGGACAGCCCTTCACGTTATTGCAGATGAGAGACTGAATTGA 67669 Query 8935 TGCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGC 8994 || || || | ||| | |||||||| || || || || ||||||||||||||||| | Sbjct 67668 GGCAGTGTTGATGATTTTAAAACCTACTTCTCCACCAAAAGTGCTGGGTTTCCAGTAGTC 67609 Query 8995 CGGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGAT 9054 || || ||||| || ||| || ||||||||||| || || ||||| || || | Sbjct 67608 AGGAGAACAGATAGGATTACCCAAAAGTCCTTTCAAGGAGAATGGTGCCCCAAGTTCTAC 67549 Query 9055 GATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAG 9114 ||| |||| |||||||||||| | || || || ||||| || | | | ||| || || Sbjct 67548 CATGGTCTCCCCGAAGATGGCATCTGGGCGAGGCTTTTCCACCAGAAGGGCAGGATACAG 67489 Query 9115 TTCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACC 9174 || | || || | ||| |||||||| ||||| ||||| ||||| || |||||||| || Sbjct 67488 CTCCATGGCATCAATGTCACCATAGAGTGCTTCTAACTCCGCAGCCATTTCCTTCTCTCC 67429 Query 9175 T 9175 | Sbjct 67428 T 67428 Score = 152 bits (168), Expect = 7e-32 Identities = 168/224 (75%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 9739 GTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGAACATCGCAGACC 9798 || || ||||| | || ||| ||||||| || || || |||||||| ||||| || || Sbjct 66163 GTCTGGAACAAGCGTTCATCATCCCATTCTGGATGCTCCTGTTTGAGGACATCACACACT 66104 Query 9799 CTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGCACTAAACCAAAC 9858 ||||||||||| | |||||| || ||||| |||||||| | || ||||| | |||||| Sbjct 66103 CTGTTGTGTTCCCGCAGCCAAATCGTGGCATACATCATCAGGCCAGGCACCAGACCAAAG 66044 Query 9859 ACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCATACAGCATATGC 9918 || || | |||||| ||||| ||||| | || || | | |||| || | ||| | | Sbjct 66043 ACCTCCTGCCCCACAGCAAACCGCAGGTGCTCAGGAATATGAGGCGGGTAGATCATTTCC 65984 Query 9919 ACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAAT 9962 ||||| || |||||||| ||||| ||||||| || || | ||| Sbjct 65983 ACCTGAGTGTCTTTGACTGTGGGCGGATACACCTCGCCATTAAT 65940 Score = 111 bits (122), Expect = 2e-19 Identities = 133/181 (73%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 10117 TCGCTCTTACCCCATGCCCCAATCCTGTCGTGAAAGCCGGTCCTCGCACCATATCGGTCC 10176 ||| ||||||||| || |||| ||| | |||||||| || |||||| ||| ||| Sbjct 65050 TCGGTCTTACCCCGTGACCCAGGCCTTTGGTGAAAGCTGGACCTCGCTTAGGATCTGTCT 64991 Query 10177 TAAAAAATTGGTGTGTAAAGTGTTGCCCGAAAAAAGCGAACATCAGGTTGGTGCCCTGGG 10236 | ||||| || || || ||||| || | ||||| || ||||||| || |||||||||| Sbjct 64990 TGAAAAACTGATGGGTGAAGTGCTGGGCAAAAAATGCAAACATCATATTTGTGCCCTGGG 64931 Query 10237 GATCGGGGATAAAGGTCCTCCGAATAAAAACTTTGTCCACAATCTGTGTTGAATCGGGCA 10296 | || ||||| || | || | | | || ||| |||||||||| | ||||||| || | Sbjct 64930 GGTCAGGGATGAACTTTCTTCTTAGGAGAAATTTTTCCACAATCTCTTTTGAATCAGGAA 64871 Query 10297 G 10297 | Sbjct 64870 G 64870 Score = 91.5 bits (100), Expect = 2e-13 Identities = 107/144 (74%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 10840 CTTACGGGTCGAACAGTGCCGATCATAAAACCCCGTCCGCGTACAATCGCACCAATAACG 10899 |||||| || ||||||| | |||| || || || ||||| || || ||| ||| | Sbjct 63414 CTTACGTGTTGAACAGTTTTCACCATAGAATCCTGTGCGCGTGCAGTCACACTGATACTG 63355 Query 10900 ATCAAACCCCACCGTCATGCATACCCCTCGATTCTGGCACGGGTGCGAACAGCAAGGGTT 10959 ||||| ||||| |||| ||||| ||||| || || ||||||| ||||||||||| || Sbjct 63354 GTCAAATCCCACACTCATACATACACCTCGGTTTTGACACGGGTTGGAACAGCAAGGATT 63295 Query 10960 GGCTGCAATTTAAAAGATAGAATA 10983 ||| ||| |||||| || ||| Sbjct 63294 TGCTACAA--TAAAAGTAAGGATA 63273 >seq47 Length=2325097 Score = 109 bits (120), Expect = 8e-19 Identities = 175/249 (70%), Gaps = 2/249 (1%) Strand=Plus/Plus Query 8933 GTTGCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTAC 8992 || || || || || |||| || || | || || || || || || |||||||||||| Sbjct 319156 GTAGCCGTCTTGACAATGTTGAAGCCCATTTCACCACCAAATGTACTCGGTTTCCAGTAC 319215 Query 8993 GCCGGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCG 9052 |||| || |||||| || | | ||| || || | ||| || ||||| || | || Sbjct 319216 TCCGGAGAACAGATGGGATTGCCTAGGAGGCCCTTGAGGGAGAAGGGAGCTCCAATTTCT 319275 Query 9053 ATGATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAG-CCAGTGTA 9111 || || ||||| || ||||||| ||| | || |||| || | || |||| ||| Sbjct 319276 ATCATACTCTCCCCAAAGATGGAGTTTGGATGGCACTTCTCGA-GAAGCAGCCCAGGGTA 319334 Query 9112 GAGTTCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTC 9171 || || | || |||| ||| ||||| || | |||||||| || || ||||||||||| Sbjct 319335 GAACTCCAAGGCATCGATGTCTCCATACAGCTCCTCCAACTCAGCTGCCATCTCCTTCTC 319394 Query 9172 ACCTACAAG 9180 |||||||| Sbjct 319395 TCCTACAAG 319403 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723247652679800