Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Equus_20przewalskii_20[refseq_20GCF_5F000696695.1_202014-06-05] 53,097 sequences; 2,395,954,271 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq23030 154 3e-32 seq5432 140 8e-28 seq38 118 2e-21 seq4713 91.5 3e-13 seq145 84.2 5e-11 >seq23030 Length=1446 Score = 154 bits (170), Expect = 3e-32 Identities = 160/210 (76%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 |||||| ||||| ||||| |||||||| |||| ||||||||||| || || | ||||| Sbjct 293 CAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATC 352 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 ||||||||||| |||||||||||||| | ||||||||| || || || ||| || Sbjct 353 CTCCAGCTGCTTCCCGGCGAAGATGAGCCTCTGCTGGTCGGGGGGGATGCCCTCTTTATC 412 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||| ||||| ||| ||| |||| |||||| | | || || |||| ||||| || Sbjct 413 CTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGT 472 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| ||||| || || ||||| ||||| || Sbjct 473 CTTCCCCGTCAGGGTCTTCACGAAAATCTG 502 Score = 154 bits (170), Expect = 3e-32 Identities = 160/210 (76%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 |||||| ||||| ||||| |||||||| |||| ||||||||||| || || | ||||| Sbjct 521 CAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATC 580 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 ||||||||||| |||||||||||||| | ||||||||| || || || ||| || Sbjct 581 CTCCAGCTGCTTCCCGGCGAAGATGAGCCTCTGCTGGTCGGGGGGGATGCCCTCTTTATC 640 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||| ||||| ||| ||| |||| |||||| | | || || |||| ||||| || Sbjct 641 CTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGT 700 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| ||||| || || ||||| ||||| || Sbjct 701 CTTCCCCGTCAGGGTCTTCACGAAAATCTG 730 Score = 145 bits (160), Expect = 2e-29 Identities = 164/219 (75%), Gaps = 3/219 (1%) Strand=Plus/Plus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 |||||| ||||| ||||| |||||||| |||| ||||||||||| || || | ||||| Sbjct 749 CAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATC 808 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 ||||||||||| |||||||||||||| | ||||||||| || || || || || Sbjct 809 CTCCAGCTGCTTCCCGGCGAAGATGAGCCTCTGCTGGTCGGGGGGGATGCCCTCCTTGTC 868 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||| ||||| ||| ||| |||| |||||| | | || || |||| ||||| || Sbjct 869 CTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGT 928 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTGGTACATTTT 199635 ||| || || || || |||||||| || || |||||| Sbjct 929 CTTGCCGGTCAGGGTCTTCACAAAGATCTG---CATTTT 964 Score = 131 bits (144), Expect = 4e-25 Identities = 155/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 ||| || ||||| || |||||||| || |||| |||||| |||| | ||| | ||||| Sbjct 65 CAGCACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATC 124 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 |||||||||||| || || |||||||| | ||||||||| || || || || || Sbjct 125 TTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGGATGCCCTCCTTATC 184 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||| ||||| ||| ||| |||| |||||| | | || || |||| ||||| || Sbjct 185 CTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGT 244 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| ||||| || || ||||| ||||| || Sbjct 245 CTTCCCCGTCAGGGTCTTCACGAAAATCTG 274 >seq5432 Length=86301 Score = 140 bits (154), Expect = 8e-28 Identities = 157/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 |||||| ||||| ||||| || || || |||| ||||||||||| || || | ||||| Sbjct 81673 CAGGACCAGGTGCAGAGTAGATTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATC 81614 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 ||||||||||| |||||||||||||| | ||||||||| || || || || || Sbjct 81613 CTCCAGCTGCTTCCCGGCGAAGATGAGCCTCTGCTGGTCGGGGGGGATGCCCTCCTTGTC 81554 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||| ||||| ||| ||| |||| |||||| | | || || |||| ||||| || Sbjct 81553 CTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGT 81494 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| ||||| || || ||||| ||||| || Sbjct 81493 CTTCCCCGTCAGGGTCTTCACGAAAATCTG 81464 Score = 113 bits (124), Expect = 1e-19 Identities = 86/102 (84%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 |||||| ||||| ||||| |||||||| |||| ||||||||||| || || | ||||| Sbjct 81445 CAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATC 81386 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGG 199518 ||||||||||| |||||||||||||| | ||||||||| || Sbjct 81385 CTCCAGCTGCTTCCCGGCGAAGATGAGCCTCTGCTGGTCGGG 81344 >seq38 Length=2414427 Score = 118 bits (130), Expect = 2e-21 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 |||||||||| ||||| || ||||| || |||||||| ||||||||||| ||||| Sbjct 980157 CGAAGTCTCAACACAAGATGAAGAGTGGATTCCTTTTGATTGTTGTAGTCAGACAAAGCA 980098 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 |||||||| || ||||| || || ||||| || | ||||| || ||| ||||||| Sbjct 980097 TGTCCATCTTTCATTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCT 980038 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||| | ||| | || || | ||| || || | Sbjct 980037 TCCGTATCCTGGATCTTGGCCTTTATATTTTCTATTGTATCCTAGGGTTCAACCTCGAGA 979978 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| ||||| || |||||||| ||||| || Sbjct 979977 GTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTG 979940 >seq4713 Length=113386 Score = 91.5 bits (100), Expect = 3e-13 Identities = 79/98 (81%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || ||||| || |||||||| || |||| |||||| |||| | ||| | |||||| Sbjct 51593 AGCACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCT 51652 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTC 199515 ||||||||||| || || |||||||| | ||||||||| Sbjct 51653 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTC 51690 >seq145 Length=1567002 Score = 84.2 bits (92), Expect = 5e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 199440 CCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGA 199499 ||||||| | ||||||||||| |||||| | |||||||||||| ||||| || || |||| Sbjct 1533067 CCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGA 1533126 Query 199500 TGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || | ||||| || ||| ||||||| Sbjct 1533127 TCAGTCTTTGCTGATCAGGAGGAATTCCT 1533155 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178119573372499