Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Equus_20przewalskii_20[refseq_20GCF_5F000696695.1_202014-06-05] 53,097 sequences; 2,395,954,271 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq3735 190 8e-43 seq2559 168 3e-36 seq4951 132 2e-25 seq676 100 1e-15 seq38 100 1e-15 seq25 93.3 2e-13 seq594 87.8 7e-12 >seq3735 Length=167216 Score = 190 bits (210), Expect = 8e-43 Identities = 466/699 (67%), Gaps = 17/699 (2%) Strand=Plus/Plus Query 450914 GCAATTGGAATTGATCTTGGAACCACCTTTTCATGTGTAGGTGTTTACCAAAATGGAAAT 450973 ||| |||| ||||||||||| ||||||| || ||||| ||||||| ||| ||||||| Sbjct 28130 GCAGTTGGCATTGATCTTGGCACCACCTACTCGTGTGTGGGTGTTTTCCAGCATGGAAAA 28189 Query 450974 GTAGAAATTATAGCAAATGACCAAGGATCACGAACTACTCCTTCATGGGTAAGTTTTACG 451033 || ||||| ||||| ||||| |||||| ||||| || || | || |||||| Sbjct 28190 GTGGAAATAATAGCCAATGATCAAGGAAACCGAACCACCCCAAGCTATGTCGCTTTTACT 28249 Query 451034 GATTCAGAAAGACTTTTAGGGCAAGCTGCTA--AATCAA-TGGTAAATTCAAATGCCAAA 451090 || | ||| || | | || | ||||| | || ||| | | || | || | | Sbjct 28250 GACACGGAACGATTGATCGGTGATGCTGCAAAGAACCAAGTTGCAA---CGAACCCGACC 28306 Query 451091 AACACAGTATATGATGCTAAACGTTTAATTGGCCGTATGTATGATGATGATACTGTACAA 451150 ||||| || | |||||| |||||| | ||||| |||| | |||||||| | ||| || Sbjct 28307 AACACGGTTTTTGATGCCAAACGTCTGATTGGACGTAGATTTGATGATGCTGTTGTCCAG 28366 Query 451151 AAAGAGA--AAAAATT--CTTTTCTTATGATGTAGTAAATCAAAAAGGAAAGCCCTATAT 451206 || | || ||| | ||| ||| || || ||| | ||| | |||| | | Sbjct 28367 TCTGATATGAAGCATTGGCCCTTC--ATG--GTGGTGAATGATGCAGGCAGGCCCAAGGT 28422 Query 451207 TCAAGTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGT 451266 |||||| | || || || || || |||| ||| ||| || || | || |||||||| Sbjct 28423 CCAAGTAGAATACAAGGGAGAGACAAAAAGTTTCTATCCAGAGGAGGTGTCTTCTATGGT 28482 Query 451267 TCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGT 451326 | | || || ||||| |||| ||||| || |||| | ||||| |||| || Sbjct 28483 TTTGACAAAGATGAAGGAAATCACAGAAGCCTACCTTGGGAAGACTGTTACCAATGCTGT 28542 Query 451327 AATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACA 451386 | || || || ||||| || ||||| | || || || || || |||||||| ||| Sbjct 28543 TGTCACAGTACCTGCTTACTTTAATGACTCTCAGCGTCAGGCTACCAAAGATGCTGGAAC 28602 Query 451387 TATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATA 451446 |||||||||| | ||||| ||| |||| || ||||| || || || |||||| | || || Sbjct 28603 TATTGCTGGTCTCAATGTACTTAGAATCATCAATGAGCCAACTGCTGCTGCTATTGCTTA 28662 Query 451447 TGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGG 451506 || ||| || ||| | || || | ||| | | ||||| || || || Sbjct 28663 CGGTTTAGACAA---AAAGGTTGGAGCTGAGAGAAACGTACTGACCTTTGACTTAGGAGG 28719 Query 451507 AGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCAAC 451566 || ||| |||| || | || | ||||||||||| | ||||| || || | || Sbjct 28720 TGGCACTTTTGATGTGTCAATCCTCACTATTGAAGATGGAATCTTTGAGGTCAAATCTAC 28779 Query 451567 CAATGGTGATACTCATCTAGGAGGTGAAGATATTGATAA 451605 ||| || || || |||| || ||||| |||| || Sbjct 28780 AGCTGGAGACACCCACTTAGGTGGAGAAGACTTTGACAA 28818 >seq2559 Length=269176 Score = 168 bits (186), Expect = 3e-36 Identities = 459/697 (66%), Gaps = 13/697 (2%) Strand=Plus/Minus Query 450914 GCAATTGGAATTGATCTTGGAACCACCTTTTCATGTGTAGGTGTTTACCAAAATGGAAAT 450973 || ||||| ||||| || || ||||||| || || || || || | ||| | || || Sbjct 267548 GCCATTGGCATTGACCTGGGTACCACCTACTCGTGCGTGGGGGTGTTCCAGCACGGCAAG 267489 Query 450974 GTAGAAATTATAGCAAATGACCAAGGATCACGAACTACTCCTTCATGGGTAAGT----TT 451029 || || || || || || ||||| || || || ||||| || | || || || Sbjct 267488 GTGGAGATCATCGCCAACGACCAGGGCAACCGCACCACTCC--CA--GCTACGTGGCCTT 267433 Query 451030 TACGGATTCAGAAAGACTTTTAGGGCAAGCTGCTAA-ATCAATGGTAAATTCAAATGCCA 451088 ||||| | || | || | ||| | || || || | | | |||| ||| || Sbjct 267432 CACGGACACCGAGCGGCTCATTGGGGATGCAGCCAAGAACCA-GGTAGCCATGAATCCCC 267374 Query 451089 AAAACACAGTATATGATGCTAAACGTTTAATTGGCCGTATGTATGATGATGATACTGTAC 451148 | ||||| || | |||||| |||||| | || ||| | | | | ||||| | || | Sbjct 267373 AGAACACTGTCTTTGATGCCAAACGTCTGATCGGCAGGAAATTTAATGATCCTGTAGTGC 267314 Query 451149 AAAAAGAGAAAAAATTCTTTTCTTATGATGTAGTAAATCAAAAAGGAAAGCCCTATATTC 451208 || ||| | ||| | | ||| | | ||| | ||| | |||| |||||| | | Sbjct 267313 AATCAGACATGAAACTTTGGCCTTTTCAAGTAATCAATGACGAAGGCAAGCCCAAGGTAA 267254 Query 451209 AAGTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTTC 451268 || || ||||| || | ||| |||| ||||| |||||||| |||||||| | Sbjct 267253 TGGTGTCCTACAAAGGGGAGAAAAAAGCTTTCTACCCTGAGGAAATTTCTTCTATGGTGC 267194 Query 451269 TTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAA 451328 | ||||| ||||| || || || || | | | || || || || |||| || | Sbjct 267193 TGACTAAGATGAAGGAGACTGCTGAGGCTTTTTTGGGCCACCCTGTCACCAATGCTGTGA 267134 Query 451329 TTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATA 451388 | ||||| || |||||||||||||| | ||||| || || || || |||||||| | Sbjct 267133 TCACTGTGCCAGCTTATTTCAATGACTCTCAACGCCAGGCCACCAAGGATGCAGGTGTGA 267074 Query 451389 TTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATG 451448 |||| ||| | ||||| || ||||||| || ||||| ||||| ||||| | || |||| Sbjct 267073 TTGCGGGTCTCAATGTGCTAAGAATTATCAACGAACCCACAGCTGCTGCCATTGCCTATG 267014 Query 451449 GACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGGAG 451508 | ||| ||| | || | ||| | | || || | | |||||| | ||||||| Sbjct 267013 GCTTAGATAAAGC---AGGTCAGGGAGAGAGACATGTTCTGATCTTTGATCTGGGTGGAG 266957 Query 451509 GAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCAACCA 451568 | || |||| || || || | || || |||||| | ||||| |||||||| || Sbjct 266956 GCACATTTGATGTGTCCGTCCTGACCATAGATGATGGGATTTTTGAGGTAAAGGCCACAG 266897 Query 451569 ATGGTGATACTCATCTAGGAGGTGAAGATATTGATAA 451605 ||| || || || || || || || || |||| || Sbjct 266896 CTGGGGACACCCACCTGGGTGGAGAGGACTTTGACAA 266860 >seq4951 Length=104455 Score = 132 bits (146), Expect = 2e-25 Identities = 344/524 (66%), Gaps = 3/524 (1%) Strand=Plus/Plus Query 451082 AATGCCAAAAACACAGTATATGATGCTAAACGTTTAATTGGCCGTATGTATGATGATGAT 451141 ||| || | ||||| || | |||||| |||||| | || || | | | | ||||| | Sbjct 79275 AATCCCCAGAACACTGTCTTTGATGCCAAACGTCTGATCAGCAGGAAATTTAATGATCCT 79334 Query 451142 ACTGTACAAAAAGAGAAAAAATTCTTTTCTTATGATGTAGTAAATCAAAAAGGAAAGCCC 451201 | || ||| || | ||| | | ||| | | ||| | ||| | |||| |||||| Sbjct 79335 GCAGTGCAATCGGACATGAAACTTTGGCCTTTTCAAGTAATCAATGACGAAGGCAAGCCC 79394 Query 451202 TATATTCAAGTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCT 451261 | | || || ||||| || | ||| |||| || || |||||||| ||| Sbjct 79395 AAGGTAATGGTGTCCTACAAAGGGGAGAAAAAAGCTTTCTACCCCGAGGAAATTTCTTCT 79454 Query 451262 ATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGAT 451321 ||| | || ||||| ||||| || || || || | | | || || || || || Sbjct 79455 ATGATGCTGACTAAGATGAAGGAGACTGCTGAGGCTTTTTTGGGCCACCCTGTCACCAAT 79514 Query 451322 GCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCA 451381 || | || ||||| || |||||||||||||| | |||| || || || || |||||| Sbjct 79515 GCTATGATCACTGTGCCAGCTTATTTCAATGACTCTCAACACCAGGCCACCAAGGATGCA 79574 Query 451382 GGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTA 451441 || ||||| ||| | || || || ||||||| || ||||| ||||| ||||| | Sbjct 79575 GGTGTGATTGCGGGTCTCAACGTGCTAAGAATTATCAACGAACCCACAGCTGCTGCCATT 79634 Query 451442 GCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTT 451501 || ||||| ||| ||| | || | ||| | | || || | | |||||| | Sbjct 79635 GCCTATGGCTTAGATAAAGC---AGGTCAGGGAGAGAGACATGTTCTGATCTTTGATCTG 79691 Query 451502 GGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAG 451561 |||||||| || |||| || || || | || || |||||| | ||||| |||||| Sbjct 79692 GGTGGAGGCACATTTGATGTGTCCGTCCTGACCATAGATGATGGGATTTTTGAGGTAAAG 79751 Query 451562 GCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATAA 451605 | || ||| || || || || || || || || |||| || Sbjct 79752 ACCACAGCTGGGGACACCCACCTGGGTGGAGAGGACTTTGACAA 79795 >seq676 Length=751668 Score = 100 bits (110), Expect = 1e-15 Identities = 90/113 (80%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 451313 GTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACT 451372 ||||| ||||||| ||||||| || || |||||||||||||| ||||| || ||||| Sbjct 123623 GTTACCCATGCAGTTGTTACTGTACCAGCCTATTTCAATGATGCCCAACGCCAGGCAACC 123564 Query 451373 AAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACC 451425 |||||||| ||| ||||||||| || |||||| | | || || ||||| || Sbjct 123563 AAAGATGCTGGAACTATTGCTGGATTGAATGTTATGAGGATCATCAATGAGCC 123511 Score = 84.2 bits (92), Expect = 9e-11 Identities = 80/102 (78%), Gaps = 3/102 (3%) Strand=Plus/Minus Query 451195 AAAGCCCTATATTCAAGTAAATTATAAAGGTG---AAACTAAAACTTTTGCTCCTGAAGA 451251 ||| || || |||||||| || | ||||| |||| || || |||||||||||||| Sbjct 124073 AAAACCATACATTCAAGTTGATATTGGAGGTGGGCAAACAAAGACATTTGCTCCTGAAGA 124014 Query 451252 AATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGA 451293 |||||| | |||||||| ||||||||||| ||||| || || Sbjct 124013 AATTTCTGCCATGGTTCTCACTAAAATGAAGGAAACTGCTGA 123972 >seq38 Length=2414427 Score = 100 bits (110), Expect = 1e-15 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | |||||||| ||||| || || || || || || ||||| || |||||| | | Sbjct 979937 ATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACTCTCGAGGTTGAACCCTAG 979996 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| || ||| ||| || || || || |||| ||||||||||||||||||||| Sbjct 979997 GATACAATAGAAAATATAAAGGCCAAGATCCAGGATACGGAAGGAATTCCTCCTGATCAG 980056 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 ||| | | || || | || || ||| | |||||||| ||||| | || || || Sbjct 980057 CAAAGACTGATCTTTGCTGGCAAGCAAATGAAAGATGGACATGCTTTGTCTGACTACAAC 980116 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTAAGACT 391267 | | | ||||| | || ||||| | || || ||||| Sbjct 980117 AATCAAAAGGAATCCACTCTTCATCTTGTGTTGAGACT 980154 >seq25 Length=2613355 Score = 93.3 bits (102), Expect = 2e-13 Identities = 81/101 (80%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 450914 GCAATTGGAATTGATCTTGGAACCACCTTTTCATGTGTAGGTGTTTACCAAAATGGAAAT 450973 ||| |||| ||||||||||| ||||||| || ||||| ||||||| ||| ||||||| Sbjct 1859711 GCAGTTGGCATTGATCTTGGCACCACCTACTCGTGTGTGGGTGTTTTCCAGCATGGAAAA 1859652 Query 450974 GTAGAAATTATAGCAAATGACCAAGGATCACGAACTACTCC 451014 || ||||| ||||| ||||| |||||| ||||| || || Sbjct 1859651 GTGGAAATAATAGCCAATGATCAAGGAAACCGAACCACCCC 1859611 >seq594 Length=811271 Score = 87.8 bits (96), Expect = 7e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 451367 GCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCT 451426 || ||||| ||||| || || || |||| ||||||| |||||| | ||||||||||| Sbjct 552381 GCCACTAAGGATGCTGGTCAGATATCTGGACTAAATGTACTTCGAGTAATTAATGAACCC 552440 Query 451427 ACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGA 451467 ||||| ||||| || || ||||| |||| |||||| |||| Sbjct 552441 ACAGCTGCTGCACTGGCTTATGGTCTAGACAAATCAGAAGA 552481 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1974374308276476