Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Equus_20przewalskii_20[refseq_20GCF_5F000696695.1_202014-06-05] 53,097 sequences; 2,395,954,271 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq3735 232 5e-55 seq25 122 7e-22 seq38 98.7 8e-15 seq676 96.9 3e-14 seq5247 87.8 1e-11 >seq3735 Length=167216 Score = 232 bits (256), Expect = 5e-55 Identities = 377/534 (71%), Gaps = 8/534 (1%) Strand=Plus/Plus Query 549998 GGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAA 550057 || || ||| | || ||||| || ||||| ||||||| || |||| ||||| ||| Sbjct 28136 GGCATTGATCTTGGCACCACCTACTCGTGTGTGGGTGTTTTCCAGCATGGAAAAGTGGAA 28195 Query 550058 ATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAAACT 550117 || || |||||||||||||| ||| |||| || ||| ||||| |||| || || || Sbjct 28196 ATAATAGCCAATGATCAAGGAAACCGAACCACCCCAAGCTATGTCGCTTTTACTGACACG 28255 Query 550118 GAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAATACTATT 550177 |||| || | |||||||| ||||| | |||| | || || ||||| || || Sbjct 28256 GAACGATTGATCGGTGATGCTGCAAAGAACCAAGTTGCAACGAACCCGACCAACACGGTT 28315 Query 550178 TTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCAGATATG 550237 |||||||| |||||| | |||||| | || ||| ||||| | ||| ||| | |||||| Sbjct 28316 TTTGATGCCAAACGTCTGATTGGACGTAGATTTGATGATGCTGTTGTCCAGTCTGATATG 28375 Query 550238 AAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAGCTACTCAT 550297 ||||||||||| ||| | || |||| | | || | || | | ||| || Sbjct 28376 AAGCATTGGCCCTTCATGGTGGTGAATGATGCAGGCAGGCCCAAGGTCCAAG-TAGAATA 28434 Query 550298 GAAGGATCTGTTAAACAATTT-TCACCAGAACAAATTTCATCTATGGTTTTAATGAAAAT 550356 |||| | ||| | ||| | ||||| | | || ||||||||||| | || || Sbjct 28435 CAAGGGAGAGACAAAAAGTTTCTATCCAGAGGAGGTGTCTTCTATGGTTTTGACAAAGAT 28494 Query 550357 GAAACAAA-CAGCCAG-TGCTTTTGTTGGTCAAGA-AGTTACGGATGCAGTAATAACTGT 550413 ||| ||| || ||| || | |||| |||| ||||| |||| || | || || Sbjct 28495 GAAGGAAATCA--CAGAAGCCTACCTTGG-GAAGACTGTTACCAATGCTGTTGTCACAGT 28551 Query 550414 ACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGG 550473 ||| || || ||||||||||| || ||||| ||||| |||||||||||| ||||||||| Sbjct 28552 ACCTGCTTACTTTAATGACTCTCAGCGTCAGGCTACCAAAGATGCTGGAACTATTGCTGG 28611 Query 550474 ACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGG 550527 || ||||| ||| | || |||||||| || ||||||||||| |||| || || Sbjct 28612 TCTCAATGTACTTAGAATCATCAATGAGCCAACTGCTGCTGCTATTGCTTACGG 28665 Score = 136 bits (150), Expect = 3e-26 Identities = 291/432 (67%), Gaps = 2/432 (0%) Strand=Plus/Plus Query 551913 ACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACTCAAACCACTATTGAAGTA 551972 ||| |||| ||| | || || || |||| || ||| | || || ||| |||||| | Sbjct 28907 ACTTCTTGTGAACGTGCTAAGCGTACTCTCTCTTCTAGCACCCAGGCCAGTATTGAGATT 28966 Query 551973 GATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCGAGGGCCAAATTTGAAGAT 552032 |||||| | | ||| ||||| || | |||| ||||| | | ||| ||||||||| Sbjct 28967 GATTCACTCTATGAAGGAATCGACTTCTATACCTCTATTACCCGTGCCCGATTTGAAGAA 29026 Query 552033 ATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAACAAGTTTTAAGAGATTCA 552092 | | |||| || || | || | || || ||||| ||| | | ||| | Sbjct 29027 TTGAATGCTGACCTGTTCCGTGGCACCCTGGACCCTGTAGAGAAAGCCCTTCGGGATGCC 29086 Query 552093 AAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATCTACAAGAATTCCT 552152 ||| | || || ||| | | ||||| ||||| || || ||||| ||||| | || || Sbjct 29087 AAGCTGGACAAGTCCCAGATTCATGATATTGTCCTAGTGGGTGGTTCTACCCGCATCCCC 29146 Query 552153 AAAATTCGCGAAATGTTA-AGTTCTTATTTCAATGGTAAAAAATTAAATGAAAGTGTTAA 552211 || |||| || | || || ||| || |||||| ||| || | ||| | || | || Sbjct 29147 AAGATTCAGAAACTTCTACAGGACTTCTT-CAATGGAAAAGAACTGAATAAGAGCATCAA 29205 Query 552212 TCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTCTGGACAAAC 552271 || |||||||||||||| |||||||| || | || ||||| || || |||||| | | Sbjct 29206 CCCTGATGAGGCTGTTGCTTATGGTGCAGCTGTCCAGGCAGCCATCCTATCTGGAGACAA 29265 Query 552272 TGATGAAAAACTACAAAATATTGTACTTGTAGATGTTACTCCTCTATCTCTTGGTTTAGA 552331 |||||| | ||| || | | || | ||||| |||||||| || ||||| | || Sbjct 29266 ATCTGAAAATGTTCAAGATTTGCTGCTGTTGGATGTCACTCCTCTTTCCCTTGGCATGGA 29325 Query 552332 AACAGTTGGAGG 552343 ||| | ||| || Sbjct 29326 AACTGCTGGTGG 29337 >seq25 Length=2613355 Score = 122 bits (134), Expect = 7e-22 Identities = 109/137 (80%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 550391 GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACT 550450 ||||| |||| || | || ||||| || || ||||||||||| || ||||| ||||| Sbjct 1858735 GTTACCAATGCTGTTGTCACAGTACCTGCTTACTTTAATGACTCTCAGCGTCAGGCTACC 1858676 Query 550451 AAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCT 550510 |||||||||||| ||||||||| || ||||| ||| | || |||||||| || |||||| Sbjct 1858675 AAAGATGCTGGAACTATTGCTGGTCTCAATGTACTTAGAATCATCAATGAGCCAACTGCT 1858616 Query 550511 GCTGCACTTGCATATGG 550527 ||||| |||| || || Sbjct 1858615 GCTGCTATTGCTTACGG 1858599 Score = 116 bits (128), Expect = 3e-20 Identities = 97/119 (82%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 550409 ACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATT 550468 || ||||| || || ||||||||||| || ||||| ||||| |||||||||||| |||| Sbjct 1858579 ACAGTACCTGCTTACTTTAATGACTCTCAGCGTCAGGCTACCAAAGATGCTGGAACTATT 1858520 Query 550469 GCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGG 550527 ||||| || ||||| ||| | || |||||||| || ||||||||||| |||| || || Sbjct 1858519 GCTGGTCTCAATGTACTTAGAATCATCAATGAGCCAACTGCTGCTGCTATTGCTTACGG 1858461 Score = 105 bits (116), Expect = 5e-17 Identities = 221/327 (68%), Gaps = 2/327 (1%) Strand=Plus/Minus Query 551913 ACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACTCAAACCACTATTGAAGTA 551972 |||||||| ||| | || || || |||| || ||| | || || ||| |||||| | Sbjct 1858130 ACTGCTTGTGAACGTGCTAAGCGTACTCTCTCTTCTAGCACCCAGGCCAGTATTGAGATT 1858071 Query 551973 GATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCGAGGGCCAAATTTGAAGAT 552032 |||||| | | ||| ||||| || | |||| ||||| | | ||| ||||||||| Sbjct 1858070 GATTCACTCTATGAAGGAATCGACTTCTATACCTCTATTACCCGTGCCCGATTTGAAGAA 1858011 Query 552033 ATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAACAAGTTTTAAGAGATTCA 552092 | | |||| || || | || | || || ||||| ||| | | ||| | Sbjct 1858010 TTGAATGCTGACCTGTTCCGTGGCACCCTGGACCCTGTAGAGAAAGCCCTTCGGGATGCC 1857951 Query 552093 AAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATCTACAAGAATTCCT 552152 ||| | || || ||| | | ||||| ||||| || || ||||| ||||| | || || Sbjct 1857950 AAGCTGGACAAGTCCCAGATTCATGATATTGTCCTAGTGGGTGGTTCTACCCGCATCCCC 1857891 Query 552153 AAAATTCGCGAAATGTTA-AGTTCTTATTTCAATGGTAAAAAATTAAATGAAAGTGTTAA 552211 || |||| || | || || ||| || |||||| ||| || | ||| | || | || Sbjct 1857890 AAGATTCAGAAACTTCTACAGGACTTCTT-CAATGGAAAAGAACTGAATAAGAGCATCAA 1857832 Query 552212 TCCAGATGAGGCTGTTGCCTATGGTGC 552238 || |||||||||||||| |||||||| Sbjct 1857831 CCCTGATGAGGCTGTTGCTTATGGTGC 1857805 Score = 93.3 bits (102), Expect = 3e-13 Identities = 135/189 (71%), Gaps = 4/189 (2%) Strand=Plus/Minus Query 549998 GGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAA 550057 || || ||| | || ||||| || ||||| ||||||| || |||| ||||| ||| Sbjct 1859705 GGCATTGATCTTGGCACCACCTACTCGTGTGTGGGTGTTTTCCAGCATGGAAAAGTGGAA 1859646 Query 550058 ATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAAACT 550117 || || |||||||||||||| ||| |||| || || ||||| |||| || || || Sbjct 1859645 ATAATAGCCAATGATCAAGGAAACCGAACCACCCCGAGCTATGTCGCTTTTACTGACACG 1859586 Query 550118 GAACATTTAGTTGGTGATGCAGCAAAATATCAAG--CCACTGGTAATCCTACCAATACTA 550175 |||| || | |||||||| ||||| | |||| || || || || ||||| || Sbjct 1859585 GAACGATTGATCGGTGATGCTGCAAAGAACCAAGTTGCAATG--AACCCGACCAACACGG 1859528 Query 550176 TTTTTGATG 550184 |||||| || Sbjct 1859527 TTTTTGGTG 1859519 Score = 87.8 bits (96), Expect = 1e-11 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 552468 ACTAAAGATAATAATCAACTTGGTACTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGT 552527 || || ||||| |||| ||||| | ||| | | ||| || ||||| || |||||| Sbjct 1857141 ACCAAGGATAACAATCTGCTTGGCAAGTTTGAACTCACAGGCATACCTCCAGCCCCTCGT 1857082 Query 552528 GGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCCAATGGAATTTTGAATGTGACT 552587 || || || || |||||||| ||||| ||||| ||||||||||| ||| | ||||| || Sbjct 1857081 GGTGTTCCTCAGATTGAAGTCACTTTTGATATTGATGCCAATGGCATTCTCAATGTCTCT 1857022 Query 552588 GCT 552590 ||| Sbjct 1857021 GCT 1857019 >seq38 Length=2414427 Score = 98.7 bits (108), Expect = 8e-15 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 563266 ACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTTCA 563325 ||||||||||| || ||| || | | ||||| |||| | || | ||||| Sbjct 980145 ACAAGATGAAGAGTGGATTCCTTTTGATTGTTGTAGTCAGACAAAGCATGTCCATCTTTC 980086 Query 563326 AGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGA 563385 | ||| || || ||||| || ||||||||||||||||||||||||||||| |||| || Sbjct 980085 ATTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCGTATCCTGG 980026 Query 563386 ATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAGAGTAACAGTTTTA 563445 || || |||| || |||||||| | | | |||||||| | || || Sbjct 980025 ATCTTGGCCTTTATATTTTCTATTGTATCCTAGGGTTCAACCTCGAGAGTGATGGTCTTC 979966 Query 563446 CCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 || ||||| ||||| |||||||| ||||| Sbjct 979965 CCCGTAAGGGTTTTCACGAAAATCTGCAT 979937 >seq676 Length=751668 Score = 96.9 bits (106), Expect = 3e-14 Identities = 100/130 (77%), Gaps = 2/130 (2%) Strand=Plus/Minus Query 550374 CTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACT 550433 |||||||| | || ||||| ||||||| | ||||||||||| ||||| ||||| Sbjct 123638 CTTTTGTTCTTTTAG--GTTACCCATGCAGTTGTTACTGTACCAGCCTATTTCAATGATG 123581 Query 550434 CACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTA 550493 | ||||| || || || |||||||||||| |||||||||| | |||||| | | || | Sbjct 123580 CCCAACGCCAGGCAACCAAAGATGCTGGAACTATTGCTGGATTGAATGTTATGAGGATCA 123521 Query 550494 TCAATGAACC 550503 ||||||| || Sbjct 123520 TCAATGAGCC 123511 >seq5247 Length=92488 Score = 87.8 bits (96), Expect = 1e-11 Identities = 153/218 (70%), Gaps = 6/218 (3%) Strand=Plus/Plus Query 563260 CGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTG 563317 ||||| || | || ||||| | | ||| ||| |||||||| || | ||||| | Sbjct 12480 CGGAGCACCAAGTGCAGGGTGGAGTCTCTCTGG--ATATTGTAGTCTGAGAGAGTGCGGC 12537 Query 563318 AATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTT 563377 |||||| || ||||| ||||||||||| || | |||||| ||||| || || || |||| Sbjct 12538 CATCTTCCAGCTGTTTGCCGGCAAAAATCAGACATTGCTGGTCAGGTGGGATGCCCTCTT 12597 Query 563378 TATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGT-ACATTCGAGAGTA 563436 | ||||| ||||| ||| || |||||| || ||| || || | | || || || Sbjct 12598 TGTCTTGGATTTTAGCTTTAACATTCTCAATGGTGTCACTG-GACTCAACCTCAAGGGTG 12656 Query 563437 ACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 | || || || || || || || || || || ||||| Sbjct 12657 ATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 12694 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4026487991172530