Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Equus_20przewalskii_20[refseq_20GCF_5F000696695.1_202014-06-05] 53,097 sequences; 2,395,954,271 total letters Query= NC_016448.1 Length=196691 Score E Sequences producing significant alignments: (Bits) Value seq567 141 1e-28 seq1900 140 4e-28 seq4826 96.9 4e-15 >seq567 Length=829087 Score = 141 bits (156), Expect = 1e-28 Identities = 180/248 (73%), Gaps = 0/248 (0%) Strand=Plus/Plus Query 2207 ACTGAAGAACATTCAGGTGAGCAATCACAGTCAACTGTCTCAGAATCGGATCTGCGAGAT 2266 ||||| |||| | || || |||||| |||||||||| |||| ||| || ||||| Sbjct 64997 ACTGAGGAACTTACAAGTTGCCAATCATTCTCAACTGTCTGTGAATGGGACTTGTGAGAT 65056 Query 2267 CCATCTGACCTGTTCTGTCGAGGATCCCAATGACAACATCTCCTTCAAATGGGAGGCCTT 2326 ||| ||||||||| ||| ||| |||| ||||||||||||| |||| ||| || || Sbjct 65057 CCACCTGACCTGTACTGCGGAGAATCCAAATGACAACATCTTACTCAAGTGGCAGATCTC 65116 Query 2327 GGGCAAGACGCTTCTACGCGAGCCCAACCTCACGACCTCCTGGGACCCCAGGAACAGCAG 2386 || || || |||| || ||||| |||| | |||||||||||||| || || Sbjct 65117 AGGAAACACATCTCTAAATGAAGCCAACATCACTATCTCCTGGGACCCCAAGACTTCCAA 65176 Query 2387 TGAGCAGAACTACACGTGCATCGCCGAAAACGCTGTGAGCAATCTCTCTTTCACGGTCTC 2446 ||| ||| |||||| ||||| || | || || | |||||| | || ||| | ||||| Sbjct 65177 TGAAGAGACCTACACCTGCATAGCTCAGAATCCTATCAGCAATTTATCCTTCTCCGTCTC 65236 Query 2447 GGCCCAGA 2454 ||||||| Sbjct 65237 TGCCCAGA 65244 Score = 140 bits (154), Expect = 4e-28 Identities = 230/327 (70%), Gaps = 15/327 (5%) Strand=Plus/Plus Query 1878 GTCTCCCAAACCAGCTCCACCCCGCTGATCGTGAATGGGGTGCTCGGGGAGTCCGTAACA 1937 || || || |||||||| ||||| |||| ||| ||||| | || |||||||| ||||| Sbjct 59625 GTTTCACAGACCAGCTCAGCCCCGTTGATGGTGGATGGGTTTCTGGGGGAGTCGGTAACT 59684 Query 1938 CTGCCCCTGGAATTTCCCGCGGGCGAGAAGATCAAGTCCATCACCTGGCACTACAACGGC 1997 || |||||| | |||| || || ||||||||| | ||||||||||||| ||||||| Sbjct 59685 CTTCCCCTGAAGCTTCCTGCAGGAGAGAAGATCTATTCCATCACCTGGCTTCACAACGGA 59744 Query 1998 ACCTCCATCGCCTTTATTGCCCCCTCGGAGGCCAAGAGCCCCCAGATCCACCTAACCAAT 2057 || || |||| ||| || | ||| || | || || |||| | || | Sbjct 59745 ACATCTATCGTCTTCATAGACCCAAATGACG-CACGA--------ATCCTGGTGACTGCT 59795 Query 2058 CCGAAACTGGGCAAG--CGACTCAACTTCACGCAGTCCTACTCCCTACAACTGAGCAACC 2115 | |||| || ||| ||| ||| |||| |||||||||||| | || || ||||||| Sbjct 59796 CGCAAAC--GGAAAGATGCACTGAACGTCACCCAGTCCTACTCCTTGCAGCTCAGCAACC 59853 Query 2116 TAGAGATGGAAGACACCGGGTCCTACAGTGCCCTGATGTCCTCCGAGACCACAGTTAACG 2175 | ||||| |||||| || | |||| |||| ||| | | |||| | | | | | Sbjct 59854 TGACGATGGCAGACACAGGATTTTACAAAGCCCAGATAGGCACAGAGAACTC-TTCAGTG 59912 Query 2176 -TTTCCAGCTACACGCTGAGGATCTTC 2201 ||||| | ||||| |||||||||||| Sbjct 59913 TTTTCCTGTTACACTCTGAGGATCTTC 59939 >seq1900 Length=359347 Score = 140 bits (154), Expect = 4e-28 Identities = 230/326 (71%), Gaps = 13/326 (4%) Strand=Plus/Plus Query 1878 GTCTCCCAAACCAGCTCCACCCCGCTGATCGTGAATGGGGTGCTCGGGGAGTCCGTAACA 1937 || || || |||||||| ||||| |||| ||||||||| | || |||||||| ||||| Sbjct 17035 GTTTCACAGACCAGCTCAGCCCCGTTGATAGTGAATGGGTTTCTGGGGGAGTCGGTAACT 17094 Query 1938 CTGCCCCTGGAATTTCCCGCGGGCGAGAAGATCAAGTCCATCACCTGGCACTACAACGGC 1997 || |||||| | |||| || || ||||||||| | ||||||||||||| ||||||| Sbjct 17095 CTTCCCCTGAAGCTTCCTGCAGGAGAGAAGATCTATTCCATCACCTGGCTTCACAACGGA 17154 Query 1998 ACCTCCATCGCCTTTATTGCCCCCTCGGAGGCCAAGAGCCCCCAGATCCACCTAACCAAT 2057 || || |||| | | || | ||| || | || || |||| | || | Sbjct 17155 ACATCTATCGTCGTCATAGACCCAAATGACG-CACGA--------ATCCTGGTGACTGCT 17205 Query 2058 CCGAAACTGGGCA-AGCGACTCAACTTCACGCAGTCCTACTCCCTACAACTGAGCAACCT 2116 || || ||| | | ||| ||| |||| |||||||||||| | || || || ||||| Sbjct 17206 -CGCAAATGGAAAGATGCACTGAACGTCACCCAGTCCTACTCCTTGCAGCTCAGTAACCT 17264 Query 2117 AGAGATGGAAGACACCGGGTCCTACAGTGCCCTGATGTCCTCCGAGACCACAGTTAACG- 2175 |||| ||||| || || ||||| ||| |||| || | |||| || | | | Sbjct 17265 GACTATGGCAGACATAGGATCTTACAGAGCCATGATAGCCACAGAGA-CATCTTCAGTGT 17323 Query 2176 TTTCCAGCTACACGCTGAGGATCTTC 2201 ||||||| ||||| |||||||||||| Sbjct 17324 TTTCCAGTTACACTCTGAGGATCTTC 17349 >seq4826 Length=109008 Score = 96.9 bits (106), Expect = 4e-15 Identities = 123/165 (75%), Gaps = 6/165 (4%) Strand=Plus/Minus Query 177678 ACAAATGACACCTAAATCTCTATCAAGTGGTTCTTTAATAATCAAAATATATCATCATCA 177737 ||||||||||| ||||| ||| |||||||||||||||| || | | || || | ||| Sbjct 34074 ACAAATGACACTGGGATCTCCATCCAGTGGTTCTTTAATAACCAGAGTCTA-CAGC-TCA 34017 Query 177738 CAGAAA--ATAGAGCTGTGCCGGGACCATAAAACCCTCAGAATAGACCCGGTC--GAGAG 177793 |||| | || |||||| || |||| | | ||||||| |||||||| || ||| | Sbjct 34016 CAGAGAGGATGAAGCTGTCCCAGGACAACAGCACCCTCACCATAGACCCCATCAGGAGGG 33957 Query 177794 AGGATTTGGGACGACATCACTGTGAGGTCTCCAACCTCCTCAATG 177838 ||||| ||| |||| ||||||||||||||||| ||| || Sbjct 33956 AGGATGCGGGGGATTATCAGTGTGAGGTCTCCAACCTGGTCAGTG 33912 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628865536874120