Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Equus_20przewalskii_20[refseq_20GCF_5F000696695.1_202014-06-05] 53,097 sequences; 2,395,954,271 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq2188 143 2e-29 seq406 87.8 1e-12 >seq2188 Length=317451 Score = 143 bits (158), Expect = 2e-29 Identities = 130/164 (79%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 29869 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 29928 || || |||| ||| || |||||||| ||||| || | ||||||||| ||||| ||||| Sbjct 256322 AGGCCCGTGATGTGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCAATGTTGAAGGGC 256263 Query 29929 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 29988 || || || |||||||| ||||| |||||||| ||||| || || ||||| |||| | Sbjct 256262 ACACCCAGGCCCATGTCTCCCGATCTCTGGTACAGCTGGCAGGACAGCTCACCGTTCACC 256203 Query 29989 ACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAG 30032 ||||| ||||| || | || ||||| ||||| ||||||||||| Sbjct 256202 ACGTAGAACTGGCAGAGGGCATGGCAGGGAGGCAGAGCCATGAG 256159 Score = 96.9 bits (106), Expect = 3e-15 Identities = 122/168 (73%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 30150 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30209 ||| || |||| ||||| || |||||||||||||| || ||||| || || || | || Sbjct 252555 CATATCTTTGTATTCTGCCCCAAAATGCCTCCACTGAAAGCCGTAAACTGGGCCTAAATC 252496 Query 30210 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 30269 || ||||| ||| ||| ||| ||||||| ||||||| ||| || ||||| || Sbjct 252495 CCCTTCTTCTCTGGCGGAGAATCCCAGGCTGTCCAAGAAGTCTCGGGACCCATTGGCATC 252436 Query 30270 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGAccc 30317 |||||| || || ||||| || || || || | |||||||| || Sbjct 252435 CCAGATTTTCACTCCCTTGCAAGACAGTTCATTAGCATTTGTGGATCC 252388 >seq406 Length=971737 Score = 87.8 bits (96), Expect = 1e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 112102 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 112161 || || || || ||||| |||| || || ||||| | | || | |||||| || ||| Sbjct 7535 TTGAGTTCTCTACTGAGAACTAAATTAATTCTGTCCTTTAACGGCCGATTCTTCTCAGGG 7594 Query 112162 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 112209 ||||||||||| ||||| |||||||| ||||||| |||||||| ||| Sbjct 7595 ATGGAGAACCAGGTCTTCCTACCCATAATCACCAAATTCTGCTTACCT 7642 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408353175506381