Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Equus_20przewalskii_20[refseq_20GCF_5F000696695.1_202014-06-05] 53,097 sequences; 2,395,954,271 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq4965 179 7e-40 seq2320 134 3e-26 seq1685 86.0 1e-11 >seq4965 Length=103961 Score = 179 bits (198), Expect = 7e-40 Identities = 188/245 (77%), Gaps = 4/245 (2%) Strand=Plus/Minus Query 241385 AGCTGCTGACAGCCTTGGC--ACATGTGCCACAGGACCTCCTGTTTGAGTTGGGCCACCT 241442 ||| |||| ||||| | || ||||| | || ||||| ||||||||| |||||||||| Sbjct 21725 AGCAGCTGGCAGCCGTTGCTGACATGGGTCAT--GACCTTCTGTTTGAGCTGGGCCACCT 21668 Query 241443 GGTCCCGCAGAACGGACGCGGTATTGGACAGTCCTGCGTTGTCAGACTTGAGCACCTTCA 241502 | ||||| || | | || || | ||||| || ||||| || | |||||| ||||| Sbjct 21667 GCTCCCGGAGGAGGCCGGCAGTGCTCGACAGCCCCGCGTTCTCGGCCTTGAGTGTCTTCA 21608 Query 241503 CTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCTGCCA 241562 | || |||||||| ||||||||||| ||||| || ||| ||||| |||||||| |||| Sbjct 21607 CCTTGTCCTCCAGGCGCGCGATGCGCTCCAGCTTCCGCTTCCGGCACTTGGTGGCCGCCA 21548 Query 241563 AGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCGATCG 241622 |||||||| || | ||| || ||| | |||||||| |||||||| ||||||| ||| | Sbjct 21547 GCCGGTTCCGCAGCCGCTTGCGCTCCACTTTGATGCGCTCCTGGTCTTCCATGTTGATGG 21488 Query 241623 GAGAC 241627 | ||| Sbjct 21487 GGGAC 21483 >seq2320 Length=299735 Score = 134 bits (148), Expect = 3e-26 Identities = 160/215 (74%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 241415 AGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATTGGACAGT 241474 ||||||| ||| ||||| || |||||||| || ||||| | | ||| || | ||| Sbjct 116638 AGGACCTTCTGCTTGAGCTGCGCCACCTGCTCGCGCAGCAGGCTCGCCGTGGACGCCAG- 116580 Query 241475 CCTGCGTTGTCAGACT--TGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCA 241532 || ||| || | || ||||| ||||||||||||||| || |||| |||||| || | Sbjct 116579 -CTCCGTATTCTGGCTCTTGAGCGTCTTCACTTTCTCCTCGAGGCGCGAGATGCGCTCTA 116521 Query 241533 GTTTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCT 241592 | ||||| |||||| |||| ||| || | |||||| || || | ||| || ||||||| Sbjct 116520 GCTTGCGTTTGCGGCACTTGGAGGCAGCGATGCGGTTGCGCAGCCGCTTGCGCTCCGCCT 116461 Query 241593 TGATGCGTTCCTGGTCCTCCATGTCGATCGGAGAC 241627 | ||||| ||||| ||||||||||| || ||| Sbjct 116460 TAATGCGCTCCTGCGTGTCCATGTCGATGGGCGAC 116426 >seq1685 Length=395008 Score = 86.0 bits (94), Expect = 1e-11 Identities = 89/113 (79%), Gaps = 4/113 (4%) Strand=Plus/Minus Query 213540 ATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACT-TTGC 213598 || || ||||| || ||||||||| ||| || ||||||||||| ||||| ||| || | Sbjct 374918 ATTTCTGTGCATAGATTGCTGCATTTGATCGTTCCCAGGTTCTGCTGGTT--ACTCTTCC 374861 Query 213599 GTTGGCAG-AATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGAC 213650 | | ||| |||| |||||||||||||| |||| || |||||| ||||||| Sbjct 374860 GATTACAGGAATCTTTGTAGAGCATGTACGGGGTACCTGTCTCTGTCTGGGAC 374808 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 930914530036480