Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Equus_20przewalskii_20[refseq_20GCF_5F000696695.1_202014-06-05] 53,097 sequences; 2,395,954,271 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq3735 120 2e-21 seq25 102 5e-16 seq676 86.0 4e-11 >seq3735 Length=167216 Score = 120 bits (132), Expect = 2e-21 Identities = 247/365 (68%), Gaps = 2/365 (1%) Strand=Plus/Plus Query 475485 GACGTCTTAGAACTGCTTGTGAACGTGCTAAGCGAGCTCTTTCTTCTGCTACTCAAACTA 475544 |||| || | ||| ||||||||||||||||||| |||| |||||| || || | | Sbjct 28896 GACGCCTGCGCACTTCTTGTGAACGTGCTAAGCGTACTCTCTCTTCTAGCACCCAGGCCA 28955 Query 475545 CTGTTGAAGTTGATTCTCTTTTTGAAGGAATTGATTATAATACTCTTATTACAAGGGCTA 475604 | |||| ||||||| || | ||||||||| || | |||| |||||| | || Sbjct 28956 GTATTGAGATTGATTCACTCTATGAAGGAATCGACTTCTATACCTCTATTACCCGTGCCC 29015 Query 475605 AATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAACAAGTTC 475664 ||||||||| | | |||| || || | || | || || || || ||| | Sbjct 29016 GATTTGAAGAATTGAATGCTGACCTGTTCCGTGGCACCCTGGACCCTGTAGAGAAAGCCC 29075 Query 475665 TCAGAGATTCTAAACTTGACAAATCACAAGTCCATGAAATTGTTCTTGTAGGAGGTTCAA 475724 | | ||| | || || ||||| || || | ||||| ||||| || || || ||||| | Sbjct 29076 TTCGGGATGCCAAGCTGGACAAGTCCCAGATTCATGATATTGTCCTAGTGGGTGGTTCTA 29135 Query 475725 CAAGAATTCCAAAAATAAGAGAAATGCTTTCATCA-TATTTTAATGGTAAAAAGTTAAAT 475783 | | || || || || ||||| | || | | || ||||| ||| | | ||| Sbjct 29136 CCCGCATCCCCAAGAT-TCAGAAACTTCTACAGGACTTCTTCAATGGAAAAGAACTGAAT 29194 Query 475784 GAAAGTGTAAATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAGCTATTTTA 475843 | || | || |||||||| |||||||| ||||| || |||||||| ||||| || || Sbjct 29195 AAGAGCATCAACCCTGATGAGGCTGTTGCTTATGGTGCAGCTGTCCAGGCAGCCATCCTA 29254 Query 475844 TCAGG 475848 || || Sbjct 29255 TCTGG 29259 >seq25 Length=2613355 Score = 102 bits (112), Expect = 5e-16 Identities = 227/338 (67%), Gaps = 2/338 (1%) Strand=Plus/Minus Query 475485 GACGTCTTAGAACTGCTTGTGAACGTGCTAAGCGAGCTCTTTCTTCTGCTACTCAAACTA 475544 |||| || | ||||||||||||||||||||||| |||| |||||| || || | | Sbjct 1858141 GACGCCTGCGCACTGCTTGTGAACGTGCTAAGCGTACTCTCTCTTCTAGCACCCAGGCCA 1858082 Query 475545 CTGTTGAAGTTGATTCTCTTTTTGAAGGAATTGATTATAATACTCTTATTACAAGGGCTA 475604 | |||| ||||||| || | ||||||||| || | |||| |||||| | || Sbjct 1858081 GTATTGAGATTGATTCACTCTATGAAGGAATCGACTTCTATACCTCTATTACCCGTGCCC 1858022 Query 475605 AATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAACAAGTTC 475664 ||||||||| | | |||| || || | || | || || || || ||| | Sbjct 1858021 GATTTGAAGAATTGAATGCTGACCTGTTCCGTGGCACCCTGGACCCTGTAGAGAAAGCCC 1857962 Query 475665 TCAGAGATTCTAAACTTGACAAATCACAAGTCCATGAAATTGTTCTTGTAGGAGGTTCAA 475724 | | ||| | || || ||||| || || | ||||| ||||| || || || ||||| | Sbjct 1857961 TTCGGGATGCCAAGCTGGACAAGTCCCAGATTCATGATATTGTCCTAGTGGGTGGTTCTA 1857902 Query 475725 CAAGAATTCCAAAAATAAGAGAAATGCTTTCATCA-TATTTTAATGGTAAAAAGTTAAAT 475783 | | || || || || ||||| | || | | || ||||| ||| | | ||| Sbjct 1857901 CCCGCATCCCCAAGAT-TCAGAAACTTCTACAGGACTTCTTCAATGGAAAAGAACTGAAT 1857843 Query 475784 GAAAGTGTAAATCCTGATGAAGCTGTTGCATATGGAGC 475821 | || | || |||||||| |||||||| ||||| || Sbjct 1857842 AAGAGCATCAACCCTGATGAGGCTGTTGCTTATGGTGC 1857805 Score = 87.8 bits (96), Expect = 1e-11 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 476051 ACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAAGGTATTCCTCCTGCTCCCAGA 476110 || || ||||| || ||||| | ||| | || ||| || ||||| || || | Sbjct 1857141 ACCAAGGATAACAATCTGCTTGGCAAGTTTGAACTCACAGGCATACCTCCAGCCCCTCGT 1857082 Query 476111 GGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAATGGTATTCTTAATGTTACT 476170 || |||||||| |||||||| ||||||||||||||||| ||||| ||||| ||||| || Sbjct 1857081 GGTGTTCCTCAGATTGAAGTCACTTTTGATATTGATGCCAATGGCATTCTCAATGTCTCT 1857022 Query 476171 GCT 476173 ||| Sbjct 1857021 GCT 1857019 >seq676 Length=751668 Score = 86.0 bits (94), Expect = 4e-11 Identities = 95/127 (75%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 476035 AGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAAGGTAT 476094 ||||||| || || || ||||| ||| || | ||||||||| |||| || || Sbjct 121698 AGGTGAACGACCCTTGACGAAAGACAATCACCTTTTGGGAACTTTTGATCTGACTGGAAT 121639 Query 476095 TCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAATGG 476154 ||||||||||||| | || || || || |||||||| || ||||| || |||| ||||| Sbjct 121638 TCCTCCTGCTCCCCGTGGGGTCCCACAGATTGAAGTCACCTTTGAGATAGATGTGAATGG 121579 Query 476155 TATTCTT 476161 |||||| Sbjct 121578 CATTCTT 121572 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3265901612043356