Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Equus_20przewalskii_20[refseq_20GCF_5F000696695.1_202014-06-05] 53,097 sequences; 2,395,954,271 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq1685 86.0 7e-12 seq373 82.4 9e-11 >seq1685 Length=395008 Score = 86.0 bits (94), Expect = 7e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 75896 TCACAGACGGAGACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGT 75955 || ||||| ||||| || || || || ||||| ||||| ||| | ||||| ||||||| Sbjct 374809 TCCCAGACAGAGACAGGTACCCCGTACATGCTCTACAAAGATTCCTGTAATCGGAAGAGT 374868 Query 75956 AACCAAAAGAATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTAC 76015 ||||| |||| ||||||| ||||| || ||||| ||||| ||||| |||| || Sbjct 374869 AACCAGCAGAACCTGGGAACGATCAAATGCAGCAATCTATGCACAGAAATAGTAGAATAT 374928 Query 76016 ACAGATAAGGATGAG 76030 || || |||||| Sbjct 374929 ACCAGCAAAGATGAG 374943 >seq373 Length=1017533 Score = 82.4 bits (90), Expect = 9e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 65443 AATCCATTTGACTTTATGGAAAACATTAGCCTTGATGGGAAGACCAACTTCTTTGAGAAG 65502 |||||||||||||||||||| || ||| || || |||||||| ||||||||||||||| Sbjct 532613 AATCCATTTGACTTTATGGAGAATATTTCACTGGAAGGGAAGACTAACTTCTTTGAGAAG 532554 Query 65503 CGAGTTGGGGACTAT 65517 |||| || || ||| Sbjct 532553 AGAGTAGGCGAGTAT 532539 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596173649299360