Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Equus_20przewalskii_20[refseq_20GCF_5F000696695.1_202014-06-05] 53,097 sequences; 2,395,954,271 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq5432 136 8e-27 seq38 127 4e-24 seq300 95.1 2e-14 seq148 87.8 4e-12 >seq5432 Length=86301 Score = 136 bits (150), Expect = 8e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 |||||| ||||| ||||| || | ||||||||||||||||||||| || || || ||||| Sbjct 81688 ACCTCCCCTCAAGCGCAGGACCAGGTGCAGAGTAGATTCTTTCTGGATGTTGTAGTCAGA 81629 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 || | | || || || || || || || || ||||| || || || || || || || Sbjct 81628 CAGGGTGCGCCCATCCTCCAGCTGCTTCCCGGCGAAGATGAGCCTCTGCTGGTCGGGGGG 81569 Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 || || ||||| || || ||||| || || || || || || || || | || || || Sbjct 81568 GATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCAC 81509 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| || || ||||| || |||| ||||| || || |||||||| Sbjct 81508 CTCCAGGGTGATGGTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCAT 81461 >seq38 Length=2414427 Score = 127 bits (140), Expect = 4e-24 Identities = 150/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667 || ||||| ||||| || || | || || ||||| | | || |||| | ||| Sbjct 980139 TGAAGAGTGGATTCCTTTTGATTGTTGTAGTCAGACAAAGCATGTCCATCTTTCATTTGC 980080 Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || ||||||||||| |||||||| ||||| ||||| ||||||||| |||| || ||||| Sbjct 980079 TTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCGTATCCTGGATCTTG 980020 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 || |||| |||||| || ||||| | ||||| || || | ||| || ||||| || || Sbjct 980019 GCCTTTATATTTTCTATTGTATCCTAGGGTTCAACCTCGAGAGTGATGGTCTTCCCCGTA 979960 Query 82788 AACGTCTTTACAAATATCTGCAT 82810 | || || || || |||||||| Sbjct 979959 AGGGTTTTCACGAAAATCTGCAT 979937 >seq300 Length=1131972 Score = 95.1 bits (104), Expect = 2e-14 Identities = 115/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 60155 TGGTGGTACTATATATCTAAAGGTATAGAATACTTAGATACGGTGTTTTTCATACTTAGG 60214 |||||||||| | | |||||||| | || || ||||| ||||||||||| || | ||| Sbjct 343363 TGGTGGTACTTTGTGTCTAAAGGAGTGGAGTATTTAGACACGGTGTTTTTTATCTTGAGG 343304 Query 60215 AAAAAGTTTAATCAGGTTAGTTTTTTACACGTATATCATCATTTTACTATGTTTACTTTA 60274 || || ||||| || ||| | || ||||||||||| | ||| |||||||| || Sbjct 343303 AAGAAAAACAATCAAGTCTCTTTCCTTCATGTATATCATCACTGTACAATGTTTACGTTG 343244 Query 60275 GGATGGGTAGGCATTAAATGGTTTGCCGGAGGTCAAG 60311 | ||| | || ||||| ||| | || || || |||| Sbjct 343243 TGGTGGATTGGAATTAAGTGGGTCGCAGGGGGACAAG 343207 Score = 84.2 bits (92), Expect = 4e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 60307 TCAAGCATTTTTCGGAGCTCAGTTGAATTCCTTAATCCATGTTATTATGTATACTTATTA 60366 |||||| ||||||||||| ||| |||||||| | |||||||| |||||||| | || || Sbjct 342164 TCAAGCTTTTTTCGGAGCCCAGATGAATTCCCTCATCCATGTGATTATGTACTCCTACTA 342105 Query 60367 TGGTATGGCGGCGTGTGGACCTATGTTTAAAAAGTATTTATGGTGGAAGCGTTATCTTAC 60426 || | |||| ||| || | || | |||||| | |||||||| || || || || Sbjct 342104 CGGCTTAAGTGCGTTTGGCCCATGGATTCAGAAGTATCTTTGGTGGAAACGATACCTGAC 342045 Query 60427 TATAATGCA 60435 ||| |||| Sbjct 342044 TATGTTGCA 342036 >seq148 Length=1551796 Score = 87.8 bits (96), Expect = 4e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 82653 CCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCC 82712 || ||||| ||||| || || ||||| || |||||| | ||||| ||||| |||||| || Sbjct 92433 CCATCTTCCAGTTGCTTGCCGGCAAAAATGAGTCTTAGCTGATCAGGAGGAATTCCTGCC 92374 Query 82713 TTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATC 82750 || || || ||||| || ||||||||||| | ||||| Sbjct 92373 TTGTCCTGGATCTTGGCCTTTACATTTTCTAATGTATC 92336 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981159257739883